Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04885 ATGACATCAACTCAAATTTCTGAGAGATCATCAACATCAATGGATATGGAATCATGTGTACCTCCAGGATTTAGATTTCATCCAACAGAAGAGGAACTTGTAGGGTATTATCTCAACAGGAAGATTAACTCACTCAAAATTGATCTAGATGTTATTGTTGAGGTTGATCTCTACAAAATTGAACCATGGGATATACAAGATAGATGCAAATTAGGATATGAGCAACAAAATGAGTGGTACTTTTTCAGTCACAAAGATAAAAAGTATCCAACAGGAACAAGAACTAACAGAGCCACTGCTGCTGGATTCTGGAAAGCTACTGGAAGAGATAAAGCTGTGACTTCCAAAAACAGAATTATAGGAATGAGGAAGACTCTTGTTTTTTATAAGGGACGTGCCCCTAATGGAAGGAAAACTGATTGGATTATGCATGAATATAGACATCAAACTTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCAGAGCATTTAAGAAGCCAAGTCCAAGTCATAGGCCAGGTTATGAACCATGGTATAGCAATAGTAATCAACATCAACAACCACAATATTTTGGAGATGATCAAAGCTATGCAACTACAAGACCATTATCAATCACAGATATTTTGCATGAAAATCGTTTACTCCTTCATAATCATCCTGCAACTGAAGAAGGTACAAGTTTTGGTCACCACTTTAACAATGATCAACAATTTCTATCAAACCAAACTACTGTTGTTATGGACAACAAACAACTCATTGAACTTCCACAGTTAGATAGTCCAACAACAAGTTTTGCTATCAAAGAATCTACTCAAAATGGATTCATCACAAATGAAGATCAATGCAGTGATGAAAGAAGCAACAATGGATCACAAGTAATTGATTGGAAAAGTTTGGATAACTTGTTCACTTCACATCAATATACAGATACAACTAATTACTTTACAAATCCATTGATGATGATGCCTCATAATCAACATGAGCTACAATCACAAAATCAAGCTAATCATATATTAGGATGCTTTCCAGATTCATAA 1047 0.3563 MTSTQISERSSTSMDMESCVPPGFRFHPTEEELVGYYLNRKINSLKIDLDVIVEVDLYKIEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFKKPSPSHRPGYEPWYSNSNQHQQPQYFGDDQSYATTRPLSITDILHENRLLLHNHPATEEGTSFGHHFNNDQQFLSNQTTVVMDNKQLIELPQLDSPTTSFAIKESTQNGFITNEDQCSDERSNNGSQVIDWKSLDNLFTSHQYTDTTNYFTNPLMMMPHNQHELQSQNQANHILGCFPDS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04885 348 Gene3D NAC domain 29 172 IPR036093 GO:0003677|GO:0006355
Trre2g04885 348 ProSiteProfiles NAC domain profile. 20 169 IPR003441 GO:0003677|GO:0006355
Trre2g04885 348 FunFam NAC domain-containing protein 29 173 - -
Trre2g04885 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 264 - -
Trre2g04885 348 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Trre2g04885 348 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04885 Trre-Chr2 56442627 56445508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04885 16 348 NAC Transcription Factor Family AT1G71930 52.907 7.06e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre2g04885 NAM 6.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04885 - - gmx:100812904 502.286