Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04880 ATGGGAGATTCCTACTTTGCTAAAGAGGATAACCAAATTAGTGTTCCCTCTGAACAAATTGAGGATAGTGCTATTCTTTCAGCAATGGTAGCTACCACTAATCTTGTTTATCCAGCAGTTTTAAATGCTGCTATTGATCTCAATTTATTTGAGATTATAGCTAAGCCAACACCACCCGGTGCTTTCATGTCACCATCCGAAATTGCTTCTAAGTTACCGCCTTCAACCCAACATTCGGATTTGTCTAATAGACTCGACCGAATGTTGCGTTTGCTTACTAGTTATTCCGTTCTTACTTCTGCCACCCGAACTACCGAGGATGGTAGCAACGAGAGAGTTTACGGACTCTCAATGGTCGGAAAATACTTTGTCCCCGATGAAAATAGAGGATCCTTTGATTCATTCACTAAATTTATGTTTTATCCTGCATTGTTACAAGTTTGGATGAACTTTAAGGAAGCAGTGGTTGCTGAAGATATTGATTTGTTCAAGAACATTCATGGAGTGACAAAGTATGAATACATGGGAAAGGATAAAAAAATGAACCAAATATTTAACAAGTCAATGGTTGATGTTTGTACAACAGAGATGAAAAGAATGCTTGAAATATACAATGGATTTCAAGGAATATCAACATTGGTTGATGTTGGTGGTGGAAATGGACAAAATCTCAAAATGATTATATCTAAGTACCCTTCAATAAAGGGAATTAATTTTGATCTACCCCAAGTGATTGAAAATGCACCACCACTTCCAGGCATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACAGGGTGATGCCATGATACTAAAGAATGTGTGTCACAATTGGTCAGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAAGCTCTATCACCAAATGGAAAAGTGATTGTTGCAGAGTTCATAATGCCAGAAGAACCAACAGATACTGAAGAATCTAAACTTGTTTCAACTGTTGACAATCTCATGTTTATCACAGTTGGTGGAAAGGAAAGAACTGAGAAACAATGGGAGAATTTGAGCAAACTTTCTGGATTTTCAAAATTTCAAGTGGCTTGTCGTGCTTTCTCAAGTTTAGGAATTATGGAGTTTTATAAATGA 1119 0.3691 MGDSYFAKEDNQISVPSEQIEDSAILSAMVATTNLVYPAVLNAAIDLNLFEIIAKPTPPGAFMSPSEIASKLPPSTQHSDLSNRLDRMLRLLTSYSVLTSATRTTEDGSNERVYGLSMVGKYFVPDENRGSFDSFTKFMFYPALLQVWMNFKEAVVAEDIDLFKNIHGVTKYEYMGKDKKMNQIFNKSMVDVCTTEMKRMLEIYNGFQGISTLVDVGGGNGQNLKMIISKYPSIKGINFDLPQVIENAPPLPGIEHVGGDMFASVPQGDAMILKNVCHNWSDEKCIEFLSNCHKALSPNGKVIVAEFIMPEEPTDTEESKLVSTVDNLMFITVGGKERTEKQWENLSKLSGFSKFQVACRAFSSLGIMEFYK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04880 372 FunFam Caffeic acid 3-O-methyltransferase 7 123 - -
Trre2g04880 372 FunFam Caffeic acid O-methyltransferase 126 372 - -
Trre2g04880 372 PIRSF O-mtase 5 372 IPR016461 GO:0008168
Trre2g04880 372 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Trre2g04880 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 372 IPR016461 GO:0008168
Trre2g04880 372 Gene3D - 36 200 IPR036388 -
Trre2g04880 372 Pfam O-methyltransferase domain 148 353 IPR001077 GO:0008171
Trre2g04880 372 CDD AdoMet_MTases 212 304 - -
Trre2g04880 372 PANTHER O-METHYLTRANSFERASE 31 362 IPR016461 GO:0008168
Trre2g04880 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 367 IPR029063 -
Trre2g04880 372 Gene3D Vaccinia Virus protein VP39 182 361 IPR029063 -
Trre2g04880 372 SUPERFAMILY "Winged helix" DNA-binding domain 23 127 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04880 Trre-Chr2 56390502 56392272 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04880 16 372 Monolignol Biosynthesis Gene Families AT5G54160 47.765 3.68e-112 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04880 - - ag:AAB48059 650.588