LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g04878	ATGGGAGATTCTTACATTACTAAAGAGGAGAATAACCAAATCAGTGCTACCTCATACCAAAATGAGGATAGTGCTTGTCTTTCAGCAATGGTACTTACCACTAATCTTGTTTATCCAGCAGTGTTAAATGCTGCTATTGATCTCAATTTATTTGAGATCATAGCAAAGGCAACACCACCTGGTGCTTTCATGTCACCATCCGAAATTGCTTTTGAATTGCCGCCATCAACCCAACACTCGGATTTGCCTAACAGGCTTGACCGAATGTTGCGTTTGCTTGCTAGTTATTCTGTTCTAACTTCTGCAACTAGACCTACCAAGGACGGTAGCACTGAGAGAGTTTATGGACTCTCGATGGTTGGAAAATACCTTGTCCCCGATGAAAGTCGTGGCTACTTAGCTTCATTCACCACATTTCTATGTTATCCTGCATTGTTACAAGTTTGGATGAACTTTAAGGAAGCAGTCGTTGATGAAGACATTGATTTGTTCAAGAACACTCATGGAGTAACAAAGTATGAATACATGGGAAAGGATAAGAAAATGAACCAAATATTTAACAAGTCAATGGTTGATGTTTGTGCAACAGAAATGAAAAGAATGCTTGAAATATACACTGGATTTGAGGGAATATCAACATTGGTTGATGTTGGTGGTGGAAGTGGACAAAATCTAAAAATGATTATATCTAAGTACCCATCAATAAAAGGAATTAATTTTGATCTGCCTCAGGTTATTGAAAATGCACCACCACTTCCAGGCATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACATGGAGATGCCATGATACTAAAGGCTGTGTGTCACAATTGGTCAGATGAAAAATGTATAGAATTTTTAAGAAATTGTCACAAAGCTCTGTCACTAAATGGGAAGTTGATTCTTGTGGAGTTCATATTGCCAGAAGAACCAACAGAAACTGAAGAATCTAAACTTGTTTCAACTCTTGATAATCTCATGTTCATCACTGTTGGTGGAAGAGAAAGAACTGAAAAACAATATGAGAAATTGGCTAAACTCTCTGGATTTTCCGAATTTCAAGTTGCTTGTCGTGCATTCTCCAGTTTAGGAGTCATGGAGTTTTATAACTAA	1122	0.3788	MGDSYITKEENNQISATSYQNEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIAFELPPSTQHSDLPNRLDRMLRLLASYSVLTSATRPTKDGSTERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNTHGVTKYEYMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGQNLKMIISKYPSIKGINFDLPQVIENAPPLPGIEHVGGDMFASVPHGDAMILKAVCHNWSDEKCIEFLRNCHKALSLNGKLILVEFILPEEPTETEESKLVSTLDNLMFITVGGRERTEKQYEKLAKLSGFSEFQVACRAFSSLGVMEFYN	373

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g04878	373	PANTHER	O-METHYLTRANSFERASE	29	356	IPR016461	GO:0008168
	Trre2g04878	373	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	131	370	IPR029063	-
	Trre2g04878	373	FunFam	Caffeic acid O-methyltransferase	127	373	-	-
	Trre2g04878	373	Gene3D	Vaccinia Virus protein VP39	183	362	IPR029063	-
	Trre2g04878	373	PIRSF	O-mtase	6	373	IPR016461	GO:0008168
	Trre2g04878	373	Pfam	Dimerisation domain	41	94	IPR012967	GO:0046983
	Trre2g04878	373	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	30	373	IPR016461	GO:0008168
	Trre2g04878	373	CDD	AdoMet_MTases	213	310	-	-
	Trre2g04878	373	Pfam	O-methyltransferase domain	149	354	IPR001077	GO:0008171
	Trre2g04878	373	FunFam	Caffeic acid 3-O-methyltransferase	7	124	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g04878	Trre-Chr2	56380101	56382077	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g04878	22	363	Monolignol Biosynthesis Gene Families	AT5G54160	48.980	6.98e-113	332

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g04878	-		-	ag:AAB48059	677.167

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