Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04878 ATGGGAGATTCTTACATTACTAAAGAGGAGAATAACCAAATCAGTGCTACCTCATACCAAAATGAGGATAGTGCTTGTCTTTCAGCAATGGTACTTACCACTAATCTTGTTTATCCAGCAGTGTTAAATGCTGCTATTGATCTCAATTTATTTGAGATCATAGCAAAGGCAACACCACCTGGTGCTTTCATGTCACCATCCGAAATTGCTTTTGAATTGCCGCCATCAACCCAACACTCGGATTTGCCTAACAGGCTTGACCGAATGTTGCGTTTGCTTGCTAGTTATTCTGTTCTAACTTCTGCAACTAGACCTACCAAGGACGGTAGCACTGAGAGAGTTTATGGACTCTCGATGGTTGGAAAATACCTTGTCCCCGATGAAAGTCGTGGCTACTTAGCTTCATTCACCACATTTCTATGTTATCCTGCATTGTTACAAGTTTGGATGAACTTTAAGGAAGCAGTCGTTGATGAAGACATTGATTTGTTCAAGAACACTCATGGAGTAACAAAGTATGAATACATGGGAAAGGATAAGAAAATGAACCAAATATTTAACAAGTCAATGGTTGATGTTTGTGCAACAGAAATGAAAAGAATGCTTGAAATATACACTGGATTTGAGGGAATATCAACATTGGTTGATGTTGGTGGTGGAAGTGGACAAAATCTAAAAATGATTATATCTAAGTACCCATCAATAAAAGGAATTAATTTTGATCTGCCTCAGGTTATTGAAAATGCACCACCACTTCCAGGCATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACATGGAGATGCCATGATACTAAAGGCTGTGTGTCACAATTGGTCAGATGAAAAATGTATAGAATTTTTAAGAAATTGTCACAAAGCTCTGTCACTAAATGGGAAGTTGATTCTTGTGGAGTTCATATTGCCAGAAGAACCAACAGAAACTGAAGAATCTAAACTTGTTTCAACTCTTGATAATCTCATGTTCATCACTGTTGGTGGAAGAGAAAGAACTGAAAAACAATATGAGAAATTGGCTAAACTCTCTGGATTTTCCGAATTTCAAGTTGCTTGTCGTGCATTCTCCAGTTTAGGAGTCATGGAGTTTTATAACTAA 1122 0.3788 MGDSYITKEENNQISATSYQNEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIAFELPPSTQHSDLPNRLDRMLRLLASYSVLTSATRPTKDGSTERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNTHGVTKYEYMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGQNLKMIISKYPSIKGINFDLPQVIENAPPLPGIEHVGGDMFASVPHGDAMILKAVCHNWSDEKCIEFLRNCHKALSLNGKLILVEFILPEEPTETEESKLVSTLDNLMFITVGGRERTEKQYEKLAKLSGFSEFQVACRAFSSLGVMEFYN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04878 373 PANTHER O-METHYLTRANSFERASE 29 356 IPR016461 GO:0008168
Trre2g04878 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 370 IPR029063 -
Trre2g04878 373 FunFam Caffeic acid O-methyltransferase 127 373 - -
Trre2g04878 373 Gene3D Vaccinia Virus protein VP39 183 362 IPR029063 -
Trre2g04878 373 PIRSF O-mtase 6 373 IPR016461 GO:0008168
Trre2g04878 373 Pfam Dimerisation domain 41 94 IPR012967 GO:0046983
Trre2g04878 373 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 373 IPR016461 GO:0008168
Trre2g04878 373 CDD AdoMet_MTases 213 310 - -
Trre2g04878 373 Pfam O-methyltransferase domain 149 354 IPR001077 GO:0008171
Trre2g04878 373 FunFam Caffeic acid 3-O-methyltransferase 7 124 - -
Trre2g04878 373 SUPERFAMILY "Winged helix" DNA-binding domain 22 128 IPR036390 -
Trre2g04878 373 Gene3D - 37 201 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04878 Trre-Chr2 56380101 56382077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04878 22 363 Monolignol Biosynthesis Gene Families AT5G54160 48.980 6.98e-113 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04878 - - ag:AAB48059 677.167