Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04875 ATGGGAGATTCCTATTTTACTAAAGAGGATAACAAAATTAGTGCTTCCTCAGAACAAACAGAGGACAGTGCTTGTCTTTCAGCAATGGTACTTACCAGTAATCTTGTTTATTCGGCAGTGTTAAATGCTGCTATTGATCTCAATTTATTTGAGATTATAGCTAAGGCAACACCACCTGCTGCTTTTATGTCACCAACAGAAATTGCTTCTAAATTGCCACCATCGACCCAACATTCGGACTTGCCAAACAGGCTTGACCGAATGTTGCGTTTGTTTTCTAGTTATTCTATTCTTACTTCTTCGACTCGAACCACTGAGAATGGTATTGAGAGAGTTTACGGTCTCTCAATGGTCGGAAAATACTTTGTCCCTGATGAAAGTAGAGTCTCCTTGGCATCAATGACCACCTTTTTATGTTATCCTGCATTGTTACAAGTTTGGATGAACTTTAAGGAAGCAGTGGTTGATGAAGATATTGATTTGTTCAAGAACACTCATGGAGTGACAAAGTATGAATATATGGGAAAGGATAAGAAAATGAACCAAATATTTAACAAGTCAATGGTTGATATTTGTGCAACAGAGATGAAAAGAATGCTTGAAATATACAATGGATTTGAAGGAATATCAACATTGGTTGATGTTGGTGGTGGAAGTGGACAAAATCTCAAAATGATTATATCTAAGTACCCATCAATAAAAGGAATTAATTTTGATCTGCCTCAGGTTATTGAAAATGCACCACCACTTCCAGGCATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACAGGGTGATGCCATGATACTCAAGGCTGTGTGTCACAATTGGTCAGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAAGCTCTCTCACCAAATGGGAAGATGATTCTTGTGGAGTTCATATTGCCGGAAGAACCAACAGAATCTGAAGAATCTAAACTTGTTTCAACTCTTGATAATCTCATGTTCATCACAGTTGGTGGAAGAGAAAGAACTGAGAAACAATATGAGAAATTGGCCAAACTTTCTGGATTTTCCAAATTTCAAGTTGTTTGTCGTGCTTTTTCTAGTTTAGGAGTGATGGAATTTTATAACTAA 1116 0.3701 MGDSYFTKEDNKISASSEQTEDSACLSAMVLTSNLVYSAVLNAAIDLNLFEIIAKATPPAAFMSPTEIASKLPPSTQHSDLPNRLDRMLRLFSSYSILTSSTRTTENGIERVYGLSMVGKYFVPDESRVSLASMTTFLCYPALLQVWMNFKEAVVDEDIDLFKNTHGVTKYEYMGKDKKMNQIFNKSMVDICATEMKRMLEIYNGFEGISTLVDVGGGSGQNLKMIISKYPSIKGINFDLPQVIENAPPLPGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKMILVEFILPEEPTESEESKLVSTLDNLMFITVGGRERTEKQYEKLAKLSGFSKFQVVCRAFSSLGVMEFYN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04875 371 PANTHER O-METHYLTRANSFERASE 28 354 IPR016461 GO:0008168
Trre2g04875 371 PIRSF O-mtase 5 371 IPR016461 GO:0008168
Trre2g04875 371 Gene3D - 36 199 IPR036388 -
Trre2g04875 371 CDD AdoMet_MTases 211 308 - -
Trre2g04875 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 371 IPR016461 GO:0008168
Trre2g04875 371 Pfam Dimerisation domain 40 91 IPR012967 GO:0046983
Trre2g04875 371 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
Trre2g04875 371 SUPERFAMILY "Winged helix" DNA-binding domain 21 126 IPR036390 -
Trre2g04875 371 FunFam Caffeic acid 3-O-methyltransferase 7 122 - -
Trre2g04875 371 FunFam Caffeic acid O-methyltransferase 125 371 - -
Trre2g04875 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 368 IPR029063 -
Trre2g04875 371 Gene3D Vaccinia Virus protein VP39 181 360 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04875 Trre-Chr2 56318602 56323432 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04875 20 362 Monolignol Biosynthesis Gene Families AT5G54160 50.725 1.23e-118 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04875 - - ag:AAB48059 669.077