Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04866 ATGAATCCGACAGGAAGCTTGTGTGCTAACAACTGGGCAAGGTCCTCTTCCTTGGTCCCTCCTGGGAATGGATTGCCGACAAATTTGTCCTTGGATCCATCCTCTTTCTTTGGGGTTGGTATTGAAACACCTTTCAAAGAAATCAACCAACCCTCTCCAACTCGGTGCGTGATTCCAGGTGAATCTAACAAAGATGTTAAGATAACTGATCAGGAAACCAGTAAACTCCAAGAATGGGATCCCAGTGCTATGTTGAATAACCTTTCGTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATGTAGTGCATATGATTGTTAATAAGAAGTGTCAGCCTTTCGAACAACCTCGTGAACTCGTAACTCAGGAACAGCAACTCATCACAGCTGATCTAACATCAATTATTGTTCAGTTGATCTCTACTGCAGGCACAAGTAGTGGTATTCAGCCACAAAATAATTGTGGAAACAAATTGTTTGATCATTCAATTCAGAATGATGTACCTAATAAATGTGAAATGGAGCAAAACCATAATATGGAAGAACATGAGCATAAAGACGAAGAAGATATGGAAGAGGGAGAGAATCTTCCACCTGGTTCATACGAGATTTTACAACTAGAAAAAGAAGAAATCCTTGCACCTCACACGCATTTCTGTACGATATGTGGCAAGGGGTTCAAGAGGGATGCAAATCTCCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACTGCAGCAGCCCTTGCAAAGCCACATAAAGAAACCGGGTCCGAACCAAAGCTTATCAAGAGGTATTCGTGCCCTTACGGTGGCTGCAAACGTAACAAGGATCACAAGAAGTTTCAGCCTCTGAAGACTATTTTATGTGTCAAAAACCACTACAAAAGAACACACTGTGACAAGAGTTACACTTGCAGCAGATGCCACACGAAAAAGTTTTCAGTCATCGCAGATCTCAAAACTCATGAAAAACACTGTGGCAAGGATAAGTGGCTGTGTTCTTGCGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCACTATTCCAAGGCCATACCCCGGCTATTCCTTTAGAAGAAAACAAAGGACTTGCCGAGCCACCTGATCGATGCGACGTCAAAGAAAACAGCACTATGGTAGGAAGCATGAACTTCTGTTTTGGATCAAATCCTTCAAGTGAAAATGGAGTTGATAACATCATGGATGTGAAAGCTAATATTGATGATCCTATCAATTACTTCTCATCTTTGAACTTCGAAGGCTGTAACTTTGGCGCGTTTAATGAATTCTCACAACCTCCATTCGAAGATTCAGATAGCTCTTTCTCTTTTCTCATGTCGGGATCGTTTAATTATGCTCCTAAGCCTGGTGGTGAATCATGTTCTGACAATCTGTAA 1410 0.4184 MNPTGSLCANNWARSSSLVPPGNGLPTNLSLDPSSFFGVGIETPFKEINQPSPTRCVIPGESNKDVKITDQETSKLQEWDPSAMLNNLSFLEEKIHQLQDVVHMIVNKKCQPFEQPRELVTQEQQLITADLTSIIVQLISTAGTSSGIQPQNNCGNKLFDHSIQNDVPNKCEMEQNHNMEEHEHKDEEDMEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPHKETGSEPKLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEENKGLAEPPDRCDVKENSTMVGSMNFCFGSNPSSENGVDNIMDVKANIDDPINYFSSLNFEGCNFGAFNEFSQPPFEDSDSSFSFLMSGSFNYAPKPGGESCSDNL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04866 469 SMART c2h2final6 217 239 IPR013087 -
Trre2g04866 469 SMART c2h2final6 266 299 IPR013087 -
Trre2g04866 469 SMART c2h2final6 304 326 IPR013087 -
Trre2g04866 469 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Trre2g04866 469 Gene3D Classic Zinc Finger 201 270 - -
Trre2g04866 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 244 IPR013087 -
Trre2g04866 469 SUPERFAMILY beta-beta-alpha zinc fingers 215 243 IPR036236 -
Trre2g04866 469 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 69 441 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04866 Trre-Chr2 56254216 56255724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04866 185 467 C2H2 Transcription Factor Family AT1G34370 71.280 3.10e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g04866 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04866 - - gmx:100170687 759.599