Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04863 ATGGAAGATTCAGAGGAAGATGAGCTTCTGAATCTTAGCCTTTCATTCAATAGAGAAAGAAAAAACAAAGGAAAAATCATCACAAGAGAAAACAACAATGTTTCTATGATGAGTAGTACTAATAGAAACCCCTATGAAGGCTATGAAGGAAAAATCTTTAGACTACTTCAAATGAGAGAACAAATGCTAAGAAAAAACACTCTCAACATTGAAGATTCAAATGGTCTTCCAATAATTCACTTACTTCTCACAACAGCTACTTCAGTCGATGAAAACAACTTCGATTCATCGCTTGAAAACCTAACCGATCTTTACCAAATTGTTTCATTAACCGGCGATTCAGTTCAACGAGTTGTGGCCTATTTCACCGATGGTTTAACCGCGAAACTCCTCACAAAAAAATCACCATTCTACGAAATGTTGATGGAAGAACCTACAATCGACGAAGAGTTTCTCGCATTTACAGATCTCTATAGAGTCTCACCGTATTATCAATTCGCGCATTTCACCGCGAATCAAGTTATCTTAGAAGCTTTTGAAAAAGAAGAAGAGAAAAATAACCGTTCGATACATGTCATTGATTTCGATGTTTCATACGGTTTTCAATGGCCTTCATTGATTCAATCTCTTTCGGAGAAAGCAACAAGTGGAAACAAGATCTCTCTCAGAATAACCGGATTCGGTAAGAATTTAAAAGAACTTCAAGAAACTGAATCTAGGTTAGTTAGTTTCGCAAAAAGTTTTGGTAACATTGTTTTCGAGTTTCAAGGTTTATTAAGAGGATCAAGAATAATTAACTTAAGGAAGAAGAAAAATGAAACTGTGGCTGTTAATTTAGTTTCTTATTTGAACAAATTAAGTTGTTTAATGAAAATAACTGACACATTGGGATTTGTTCATTCTCTTAATCCTTCAATCATCATAGTTGTTGAACAAGAAGGTAGTAAGAATCCTTCTAGAACCTTCTTATCAAGATTCACAGACACATTACATTATTTTGCAGCTATGTTTGATTCACTTGATGATTGTTTACCACTTGAAAGTATTGAAAGGTTAAGAATTGAGAAGAAGGTTTTTGGAAAAGAGATTAAGAGTATGCTTAATAATTATGATGTTGATGATGGTGTTGAATGTGCAAAATATGAAAAAATGGAAACATGGAAAAGTAGAATGGAGAATCATGGATTTGTTGGTATGAAAATGAGTTCAAAGTGTTTGATACAAGCTAAATTGTTACTTAAGATGAGGACAAATTATTGTCCACTTCAATTTGAGGAAGAAAGTGGTGGCGGTGGTGGCGGTGGAGGTGGTGGTGGTGGTTTCAGGGTTTCAGAAAGAGATGATGGAAGGGCTATTTCTTTAGGATGGCAAAATAGGTTTTTGCTAACTGTGTCAGCATGGCAATCACTTTGA 1413 0.3482 MEDSEEDELLNLSLSFNRERKNKGKIITRENNNVSMMSSTNRNPYEGYEGKIFRLLQMREQMLRKNTLNIEDSNGLPIIHLLLTTATSVDENNFDSSLENLTDLYQIVSLTGDSVQRVVAYFTDGLTAKLLTKKSPFYEMLMEEPTIDEEFLAFTDLYRVSPYYQFAHFTANQVILEAFEKEEEKNNRSIHVIDFDVSYGFQWPSLIQSLSEKATSGNKISLRITGFGKNLKELQETESRLVSFAKSFGNIVFEFQGLLRGSRIINLRKKKNETVAVNLVSYLNKLSCLMKITDTLGFVHSLNPSIIIVVEQEGSKNPSRTFLSRFTDTLHYFAAMFDSLDDCLPLESIERLRIEKKVFGKEIKSMLNNYDVDDGVECAKYEKMETWKSRMENHGFVGMKMSSKCLIQAKLLLKMRTNYCPLQFEEESGGGGGGGGGGGGFRVSERDDGRAISLGWQNRFLLTVSAWQSL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04863 470 Pfam GRAS domain family 79 468 IPR005202 -
Trre2g04863 470 ProSiteProfiles GRAS family profile. 69 468 IPR005202 -
Trre2g04863 470 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 74 463 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04863 Trre-Chr2 56238560 56239972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04863 86 467 GRAS Transcription Factor Family AT3G54220 32.658 9.39e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre2g04863 GRAS 5.3e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04863 - - gmx:100809458 737.258