Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04858 ATGTCTGGCAATTCAAGTTGCACCGTTTACATTGGCAATCTGGATGAGAGGGTGACAGACAGAGTCTTGTATGATATATTAATTCAAGCTGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAGTCTGAGAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCCGTCAAACTTTTCTCAGGCCTTGTAACACTGTACAAACGAACACTGAAGTTTGCGTCTGCTAATAAACAGATATCTGGAAGGGACAAAAACACCCCTAATAGCTCTACAGCTACTACACCCACATCAAATTCTTCTCAACGACCAAGGCCTTACCCTGTGCAAATAAATAGTTCAGAAAATTTTCAGTATTCCTCTAGGCATTCAATACCTGACCGATTCTCGGATCATCCGGTAAATTATTCCCAAGTTCCTCCTCCTCATCGTGTAACTGACCAACCTAGTGGGTATGGATCTCACTACAGAGGCAACCATATGGATTACAGTCGGAGAATTTTTGGGGAGGCATTGGATAACGCTACCCGTTCTAGTTCTGGTTCTAGGTCACGCCGCCCTGATGGAATCAGCCCAATCTCTTATCCACCTTACTAA 621 0.4332 MSGNSSCTVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVKLFSGLVTLYKRTLKFASANKQISGRDKNTPNSSTATTPTSNSSQRPRPYPVQINSSENFQYSSRHSIPDRFSDHPVNYSQVPPPHRVTDQPSGYGSHYRGNHMDYSRRIFGEALDNATRSSSGSRSRRPDGISPISYPPY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04858 206 SMART rrm1_1 8 82 IPR000504 GO:0003723
Trre2g04858 206 SUPERFAMILY RNA-binding domain, RBD 4 79 IPR035979 GO:0003676
Trre2g04858 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Trre2g04858 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Trre2g04858 206 MobiDBLite consensus disorder prediction 180 206 - -
Trre2g04858 206 MobiDBLite consensus disorder prediction 87 132 - -
Trre2g04858 206 Gene3D - 2 95 IPR012677 -
Trre2g04858 206 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 202 - -
Trre2g04858 206 MobiDBLite consensus disorder prediction 181 195 - -
Trre2g04858 206 MobiDBLite consensus disorder prediction 87 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04858 Trre-Chr2 56161833 56164691 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04858 9 96 Eukaryotic Initiation Factors Gene Family AT1G22760 26.136 6.15e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04858 K12831 - gmx:100784532 295.049