Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g04858 | ATGTCTGGCAATTCAAGTTGCACCGTTTACATTGGCAATCTGGATGAGAGGGTGACAGACAGAGTCTTGTATGATATATTAATTCAAGCTGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAGTCTGAGAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCCGTCAAACTTTTCTCAGGCCTTGTAACACTGTACAAACGAACACTGAAGTTTGCGTCTGCTAATAAACAGATATCTGGAAGGGACAAAAACACCCCTAATAGCTCTACAGCTACTACACCCACATCAAATTCTTCTCAACGACCAAGGCCTTACCCTGTGCAAATAAATAGTTCAGAAAATTTTCAGTATTCCTCTAGGCATTCAATACCTGACCGATTCTCGGATCATCCGGTAAATTATTCCCAAGTTCCTCCTCCTCATCGTGTAACTGACCAACCTAGTGGGTATGGATCTCACTACAGAGGCAACCATATGGATTACAGTCGGAGAATTTTTGGGGAGGCATTGGATAACGCTACCCGTTCTAGTTCTGGTTCTAGGTCACGCCGCCCTGATGGAATCAGCCCAATCTCTTATCCACCTTACTAA | 621 | 0.4332 | MSGNSSCTVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVKLFSGLVTLYKRTLKFASANKQISGRDKNTPNSSTATTPTSNSSQRPRPYPVQINSSENFQYSSRHSIPDRFSDHPVNYSQVPPPHRVTDQPSGYGSHYRGNHMDYSRRIFGEALDNATRSSSGSRSRRPDGISPISYPPY | 206 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g04858 | 206 | SMART | rrm1_1 | 8 | 82 | IPR000504 | GO:0003723 | |
Trre2g04858 | 206 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 79 | IPR035979 | GO:0003676 | |
Trre2g04858 | 206 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 79 | IPR000504 | GO:0003723 | |
Trre2g04858 | 206 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 86 | IPR000504 | GO:0003723 | |
Trre2g04858 | 206 | MobiDBLite | consensus disorder prediction | 180 | 206 | - | - | |
Trre2g04858 | 206 | MobiDBLite | consensus disorder prediction | 87 | 132 | - | - | |
Trre2g04858 | 206 | Gene3D | - | 2 | 95 | IPR012677 | - | |
Trre2g04858 | 206 | PANTHER | RNA BINDING MOTIF RBM PROTEIN -RELATED | 1 | 202 | - | - | |
Trre2g04858 | 206 | MobiDBLite | consensus disorder prediction | 181 | 195 | - | - | |
Trre2g04858 | 206 | MobiDBLite | consensus disorder prediction | 87 | 168 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g04858 | Trre-Chr2 | 56161833 | 56164691 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g04858 | 9 | 96 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 26.136 | 6.15e-07 | 47.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g04858 | K12831 | - | gmx:100784532 | 295.049 |