Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04857 ATGTCTGGCAATTCAAGTTGCACCGTTTACATTGGCAATCTGGATGAGAGGGTGACAGACAGAGTCTTGTATGATATATTAATTCAAGCTGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAGTCTGAGAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCCGTCAAACTTTTCTCAGGCCTTGTAACACTGTACAAACGAACACTGAAGTTTGCGATATCTGGAAGGGACAAAAACACCCCTAATAGCTCTACAGCTACTACACCCACATCAAATTCTTCTCAACGACCAAGGCCTTACCCTGTGCAAATAAATAGTTCAGAAAATTTTCAGTATTCCTCTAGGCATTCAATACCTGACCGATTCTCGGATCATCCGGTAAATTATTCCCAAGTTCCTCCTCCTCATCGTGTAACTGACCAACCTAGTGGGTATGGATCTCACTACAGAGGCAACCATATGGATTACAGTCGGAGAATTTTTGGGGAGGCATTGGATAACGCTACCCGTTCTAGTTCTGGTTCTAGGTCACGCCGCCCTGATGGAATCAGCCCAATCTCTTATCCACCTTACTAA 606 0.4356 MSGNSSCTVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVKLFSGLVTLYKRTLKFAISGRDKNTPNSSTATTPTSNSSQRPRPYPVQINSSENFQYSSRHSIPDRFSDHPVNYSQVPPPHRVTDQPSGYGSHYRGNHMDYSRRIFGEALDNATRSSSGSRSRRPDGISPISYPPY 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04857 201 SMART rrm1_1 8 82 IPR000504 GO:0003723
Trre2g04857 201 MobiDBLite consensus disorder prediction 85 127 - -
Trre2g04857 201 MobiDBLite consensus disorder prediction 176 190 - -
Trre2g04857 201 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 197 - -
Trre2g04857 201 Gene3D - 2 96 IPR012677 -
Trre2g04857 201 MobiDBLite consensus disorder prediction 85 162 - -
Trre2g04857 201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Trre2g04857 201 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Trre2g04857 201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Trre2g04857 201 MobiDBLite consensus disorder prediction 175 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04857 Trre-Chr2 56161833 56164691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04857 4 87 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 3.10e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04857 K12831 - gmx:100784532 301.212