Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g04857 | ATGTCTGGCAATTCAAGTTGCACCGTTTACATTGGCAATCTGGATGAGAGGGTGACAGACAGAGTCTTGTATGATATATTAATTCAAGCTGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAGTCTGAGAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCCGTCAAACTTTTCTCAGGCCTTGTAACACTGTACAAACGAACACTGAAGTTTGCGATATCTGGAAGGGACAAAAACACCCCTAATAGCTCTACAGCTACTACACCCACATCAAATTCTTCTCAACGACCAAGGCCTTACCCTGTGCAAATAAATAGTTCAGAAAATTTTCAGTATTCCTCTAGGCATTCAATACCTGACCGATTCTCGGATCATCCGGTAAATTATTCCCAAGTTCCTCCTCCTCATCGTGTAACTGACCAACCTAGTGGGTATGGATCTCACTACAGAGGCAACCATATGGATTACAGTCGGAGAATTTTTGGGGAGGCATTGGATAACGCTACCCGTTCTAGTTCTGGTTCTAGGTCACGCCGCCCTGATGGAATCAGCCCAATCTCTTATCCACCTTACTAA | 606 | 0.4356 | MSGNSSCTVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVKLFSGLVTLYKRTLKFAISGRDKNTPNSSTATTPTSNSSQRPRPYPVQINSSENFQYSSRHSIPDRFSDHPVNYSQVPPPHRVTDQPSGYGSHYRGNHMDYSRRIFGEALDNATRSSSGSRSRRPDGISPISYPPY | 201 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g04857 | 201 | SMART | rrm1_1 | 8 | 82 | IPR000504 | GO:0003723 | |
Trre2g04857 | 201 | MobiDBLite | consensus disorder prediction | 85 | 127 | - | - | |
Trre2g04857 | 201 | MobiDBLite | consensus disorder prediction | 176 | 190 | - | - | |
Trre2g04857 | 201 | PANTHER | RNA BINDING MOTIF RBM PROTEIN -RELATED | 1 | 197 | - | - | |
Trre2g04857 | 201 | Gene3D | - | 2 | 96 | IPR012677 | - | |
Trre2g04857 | 201 | MobiDBLite | consensus disorder prediction | 85 | 162 | - | - | |
Trre2g04857 | 201 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 86 | IPR000504 | GO:0003723 | |
Trre2g04857 | 201 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 80 | IPR035979 | GO:0003676 | |
Trre2g04857 | 201 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 79 | IPR000504 | GO:0003723 | |
Trre2g04857 | 201 | MobiDBLite | consensus disorder prediction | 175 | 201 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g04857 | Trre-Chr2 | 56161833 | 56164691 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g04857 | 4 | 87 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 28.571 | 3.10e-07 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g04857 | K12831 | - | gmx:100784532 | 301.212 |