Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04841 ATGGAACAAAAAATGAAAACCACAACTTCTCCTCCTCAATTACCAATCCATATTCCTATTCACACCATGTTATCAAATTCTCCACCATCTTCATCTTCTTCACCTCCTTTACAATCTCCAAAACCTTTCCCTTCACCGGCTTCTCAATATTCTCCTCCGTCTTCCACTATTCAACCACCATCTCCTCCACCACCAATTGTGGTTAGCCCTTGTGCTGCCTGCAAGATCCTTCGTCGAAGGTGTGTTGAAAAGTGTGTGTTAGCTCCATATTTTCCTCCGACTGATCCACTCAAGTTCACAATTGCTCATAGAGTATTTGGAGCTAGCAACATCATTAAGTTTTTACAGGAACTACCTGAACCTCAAAGAGCAGATGCTGTTAGCAGCATGGTTTATGAAGCAAATGCTAGGATAAGGGACCCAGTTTATGGTTGTGCAGGTGCAATATGTCAACTTCAAAAACAAGTTAGTGAGCTACAAACACAGCTAGCTAAAGCACAAGCTGAGATAGTGAACATGCATTGCCAACAAGCAAATTTAGTGGCACTAATTTGCATGGAAATGAGTAATCAATCATCACCACAAGACCATAACATGATAATTAATCAGCCCCAAGCTCATGTTGATATGAGTTGTTTCTTAGAGGACAATAATTTTGGGTCTGCTTGGGAGCCTCTTTGGACATGA 687 0.4119 MEQKMKTTTSPPQLPIHIPIHTMLSNSPPSSSSSPPLQSPKPFPSPASQYSPPSSTIQPPSPPPPIVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQLAKAQAEIVNMHCQQANLVALICMEMSNQSSPQDHNMIINQPQAHVDMSCFLEDNNFGSAWEPLWT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04841 228 MobiDBLite consensus disorder prediction 1 15 - -
Trre2g04841 228 MobiDBLite consensus disorder prediction 33 62 - -
Trre2g04841 228 Pfam Lateral organ boundaries (LOB) domain 70 167 IPR004883 -
Trre2g04841 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 69 198 - -
Trre2g04841 228 MobiDBLite consensus disorder prediction 1 62 - -
Trre2g04841 228 Coils Coil 149 176 - -
Trre2g04841 228 ProSiteProfiles LOB domain profile. 69 170 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04841 Trre-Chr2 56029935 56031531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04841 66 228 AS2 family AT1G07900 68.263 7.80e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre2g04841 LOB 6.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04841 - - gmx:100806667 314.694