LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g04833	ATGGCAAACCATCCCTTTGAAGCAGCTCTTGCATTGGAGTCTTTGAGGGCTCCTCTCAACCCACATCCAATGTCTGCTCATGATAAATATATTCATGAGATTAGGGTTAGATTTCGATCCTATTATGTGGAGTTCAACGTGCTTGATGGTGCTGTGAGACTCCCACGTATGTTTGCTGATGATTTTGGCGATGAAATTGGTCGACTTGCTACTTTGATTGATCTTGGAGGAAATCAGTTTGAAGTTTTGGTTGATAAGGTCAATGATAGTATCTATTTGACCAAAGGGTGGGCTGCTCTGCGTGATTTTTACAACATTCGTATTGGTTGCTGGATGCAGCTTGTGTATACAGGAATGAATCACTTTGGAGTTTTGGTGATGGATAGGCTTCATAACCGGATTGATCCACCAAGATTTGTGCCACCTATGAGATTAGTGATTGATAAAATTGATGTACCACCTTACTTTGTTGATAATCTACCCGACTCACCTGATCTTTTGGCATATTCACATGATCCATCTTATTTTCATATACTCCATGATAAAGTGCTAAGCCATTTTGATGTTTCTTCTGGATTTTTAGTGTTGCCCTACGAAGGGTTTGGGGAGCATGTCTTCCACCAAACAACCAACTCGGTCAAATTGGTCGATGACTCTGGAAATGCATGGTTTTGTACTTTGACTCCCGTTGCAACGCCCGTTAGATGTTTTAAACTTGGTGGTCAGTGGGGTAACATAGTTGCAGCAAGAAGGCTCTCAGTTGGAGACAATATAAGACTTGGAGTACAAGGAGCTGGTGCTGGAGAGATTGTTTACTTGGAACGAGATCCTTGA	834	0.4185	MANHPFEAALALESLRAPLNPHPMSAHDKYIHEIRVRFRSYYVEFNVLDGAVRLPRMFADDFGDEIGRLATLIDLGGNQFEVLVDKVNDSIYLTKGWAALRDFYNIRIGCWMQLVYTGMNHFGVLVMDRLHNRIDPPRFVPPMRLVIDKIDVPPYFVDNLPDSPDLLAYSHDPSYFHILHDKVLSHFDVSSGFLVLPYEGFGEHVFHQTTNSVKLVDDSGNAWFCTLTPVATPVRCFKLGGQWGNIVAARRLSVGDNIRLGVQGAGAGEIVYLERDP	277

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g04833	277	SUPERFAMILY	DNA-binding pseudobarrel domain	181	263	IPR015300	-
	Trre2g04833	277	SUPERFAMILY	DNA-binding pseudobarrel domain	42	128	IPR015300	-
	Trre2g04833	277	PANTHER	B3 DOMAIN-CONTAINING	42	257	-	-
	Trre2g04833	277	Gene3D	-	33	130	IPR015300	-
	Trre2g04833	277	CDD	B3_DNA	182	256	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g04833	Trre-Chr2	55966534	55967644	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g04833	46	135	B3 DNA Binding Superfamily	AT3G18990	27.778	2.44e-07	49.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g04833	-		-	tpra:123886139	317.39