Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04832 ATGGGGAGGAAAGGAAGTTGGTTTTCTTCTGTGAAGAAACTTTTCTTCATTTCTGATTCCAAAAAAGATCAGAAACCTCATAATCATAATCATAAGCCATCAAAGTTAACATGTTTTGGACATCATAATTATGATGATGCTGAGTGGAAAACTGGAGGAGTAGCACCAATAACTGTTGTTCCTGTTCCATCTCTTCCTGCAAAAAAAGATGTTAAAAAACCGAAAAAAATTAAGGCAGAGGATGAACAGAACAAACAAGCTTTTTCATTGATTTTAGCCACAGCCGTTGCTACCGGTGCTGCAGTTGCTGCTGCTCAGGCTGCTGCAGGGACCGCTCGTCTCAAAAGTATTCCTCGTTGTTATATTGGAAAATCAGCCGAAGAAATAGCCGCTATCAAAATTCAAACCGCTTACCGCGGATATTTGGCAAGGAGAACGTTGCGTGGATTGAGAGGCTTGGCGAGGTTGAAAGCATTGGTTAAAGGACAATCTGTTCAACGACAAGCGGCTACTACATTACAATGCATGCAAACTCTTTCGCGATTGCAATCACAAGTTAGTGCGAGGAAGATAAGAATGTCAGAGGAGAATCAATCTTTCCAACGCCAACTTCAGCATAAACGCGAAAAGGAAATGAGCAAGTTACAAGCGGCTCAACCTATTGGAGAAGAATGGGATTATAGTTCACAATCAAAGGAGCAAATCCAAGCAAAATTGTTGAACAGACAAATAGCTGCTATGAGAAGAGAAAAGGCTTTGGCCTATGCATCAACACATCAGCAAACATGGAGGAACTCTTCAAAACCTACAGATGCAACAATTATGGATCCAAACAATCCTCATTGGGGATGGAATTGGCTTGATAGATGGATGGCTTCAAGACCATGGGAAGGTCAAACCAATAAGGATCAAAAGAATCATAGATCAGCAAAAGGTGCTGCAAGCCATACAATGTCAGTTGGAGAAATTTCCAAATTGTATGCTCAAAGAGATCAAAGTCATCAAGATAATAAAAATTCTCCTAAAAGCCAAAAACCAAATAATTCAAATCTAGCTTCAAGGGCTATACCTTCAACACCTAAAGGAAAAACTAAGACATCAAGTTCAAAGGGTGGTTCATGGGGTGGTGATGATGACTCAAAAACTATTTTCAACAATAAAAAATCTGAAACTAATCGAAGACATAGCATTGCGGTATCGCTATTGAAAGACGATGAAAGCATTGTAAACTCACCTGTAAAAGCTAAATCTAAAGGGCAAAGTCCTTCTACAAAGAAGCAACTTTCTTTCCCAGCAGCAGCTTCTCCATCTGATTCTAGAAGGCATTCTGTTCCACCTAAAATTGGAATAAATTCTACTAAGAATGTTGCTACTAATCTCTCTGAAGTGAAAGGGAAAGTGAAAAATGGAGGGAGCAGATAG 1422 0.3952 MGRKGSWFSSVKKLFFISDSKKDQKPHNHNHKPSKLTCFGHHNYDDAEWKTGGVAPITVVPVPSLPAKKDVKKPKKIKAEDEQNKQAFSLILATAVATGAAVAAAQAAAGTARLKSIPRCYIGKSAEEIAAIKIQTAYRGYLARRTLRGLRGLARLKALVKGQSVQRQAATTLQCMQTLSRLQSQVSARKIRMSEENQSFQRQLQHKREKEMSKLQAAQPIGEEWDYSSQSKEQIQAKLLNRQIAAMRREKALAYASTHQQTWRNSSKPTDATIMDPNNPHWGWNWLDRWMASRPWEGQTNKDQKNHRSAKGAASHTMSVGEISKLYAQRDQSHQDNKNSPKSQKPNNSNLASRAIPSTPKGKTKTSSSKGGSWGGDDDSKTIFNNKKSETNRRHSIAVSLLKDDESIVNSPVKAKSKGQSPSTKKQLSFPAAASPSDSRRHSVPPKIGINSTKNVATNLSEVKGKVKNGGSR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04832 473 MobiDBLite consensus disorder prediction 297 391 - -
Trre2g04832 473 MobiDBLite consensus disorder prediction 258 274 - -
Trre2g04832 473 MobiDBLite consensus disorder prediction 339 375 - -
Trre2g04832 473 Coils Coil 190 210 - -
Trre2g04832 473 SMART iq_5 126 148 IPR000048 GO:0005515
Trre2g04832 473 PANTHER IQ-DOMAIN 5-RELATED 1 451 - -
Trre2g04832 473 MobiDBLite consensus disorder prediction 258 278 - -
Trre2g04832 473 MobiDBLite consensus disorder prediction 410 473 - -
Trre2g04832 473 ProSiteProfiles IQ motif profile. 127 155 IPR000048 GO:0005515
Trre2g04832 473 MobiDBLite consensus disorder prediction 446 462 - -
Trre2g04832 473 MobiDBLite consensus disorder prediction 413 436 - -
Trre2g04832 473 Gene3D iswi atpase 124 151 - -
Trre2g04832 473 Pfam IQ calmodulin-binding motif 130 148 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04832 Trre-Chr2 55958598 55960741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04832 1 448 IQD Protein Family AT5G03040 41.633 1.15e-94 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04832 - - gmx:100807725 439.499