Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04806 ATGGGTTATTCCATATTCTATGATGTTTTGTTTTTATCAATTTTTTGTGTTGGAATTTCATTGGCTTTTAACATAGAAGATCAAAAGAGAGACAAGATTGGTTTGTTACCAGGACAACCAAAGAATGTTGGATTTGAACAGTATTCAGGTTATGTTACTGTGAATGAAGAGAGTGGTAGAGCATTGTTTTATTGGTTGATTGAAGCACCATTGAATCGTGGACCTAAGTCTAGGCCACTAGTTTTATGGCTTAATGGTGGTCCTGGTTGTTCTTCTATTGCTTATGGTGCTTCTGAAGAAATTGGTCCTTTTCATATTAAGTCTGATGGCAAAACACTTTTCTTGAATCCTTATGCTTGGAACAATTTGGCAAATATATTGTTCCTTGATTCTCCTGCTGGTGTTGGTTTTTCGTATTGTAATAAAACAACAGATCTGTATACATTTGGTGACAAGAAAACAGCTGAAGATGCATATATTTTTCTAGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGGGAAAGTTATGCAGGTCATTATGTTCCTCAGTTGGCTCAACTTGTTTACCGGAGAAATAAAGGAATCAATAATCCAGATATCAATTTTAAGGGATTTATGGTTGGAAATGGTGTTACCGATGATTATCATGATTATGTTGGAACATTTGAATACTGGTGGACACATGGTTTGATTTCAGATTCAACATATAGGAATCTAAGAATTGCATGTGACTTTGGATCATCTCAGCATCCATCAGTGCAATGTATGCAGGCTCTTAGACTTGCAGTTGCTGAGCAAGGAAACATTGATCCATATAGCATTTATACACCGCCTTGTAACAATACCGGATCGCTCAGACGCGGATTGAACGGTCGTTATCCATGGATGTCTAGGGCGTATGATCCATGTACCGAAAGGTATTCTGATTTGTATTACAATCTTCCGGAAGTTCAGAAGGCGCTTCATGCCAATGTAACTGGGATTCCATATGTATGGAAGACATGCAGTGACGTTGTTGGGAATTATTGGACCGATTCTCCACTGTCTATGCTTCCTATATATCGAGAACTTATTAATGCTGGTCTAAAGATATGGGTTTTCAGTGGAGACACTGATTCTGTTGTTCCACTTACTGCGACTCGATATTCTATTGATGCCTTGAAGTTACCAACCATCATCAACTGGTATCCTTGGTATGATAGTGGCAAGGTTGGTGGATGGAGTCAAGTTTATAAAGGACTCACATTGGTTACAGTAAGAGGTGCAGGACACGAGGTTCCTCTTCATAAGCCTCGCGAAGCATTTATTCTTTTTAGATCATTCTTGGAGAACAAGTACATGCCATCAAGCTAA 1377 0.382 MGYSIFYDVLFLSIFCVGISLAFNIEDQKRDKIGLLPGQPKNVGFEQYSGYVTVNEESGRALFYWLIEAPLNRGPKSRPLVLWLNGGPGCSSIAYGASEEIGPFHIKSDGKTLFLNPYAWNNLANILFLDSPAGVGFSYCNKTTDLYTFGDKKTAEDAYIFLVNWFERFPQYKHREFYIAGESYAGHYVPQLAQLVYRRNKGINNPDINFKGFMVGNGVTDDYHDYVGTFEYWWTHGLISDSTYRNLRIACDFGSSQHPSVQCMQALRLAVAEQGNIDPYSIYTPPCNNTGSLRRGLNGRYPWMSRAYDPCTERYSDLYYNLPEVQKALHANVTGIPYVWKTCSDVVGNYWTDSPLSMLPIYRELINAGLKIWVFSGDTDSVVPLTATRYSIDALKLPTIINWYPWYDSGKVGGWSQVYKGLTLVTVRGAGHEVPLHKPREAFILFRSFLENKYMPSS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04806 458 Gene3D - 311 347 - -
Trre2g04806 458 FunFam Carboxypeptidase 358 452 - -
Trre2g04806 458 Pfam Serine carboxypeptidase 37 452 IPR001563 GO:0004185|GO:0006508
Trre2g04806 458 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Trre2g04806 458 Gene3D alpha/beta hydrolase 27 289 IPR029058 -
Trre2g04806 458 FunFam Carboxypeptidase 308 455 - -
Trre2g04806 458 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 439 IPR001563 GO:0004185|GO:0006508
Trre2g04806 458 ProSitePatterns Serine carboxypeptidases, histidine active site. 422 439 IPR033124 GO:0004185
Trre2g04806 458 SUPERFAMILY alpha/beta-Hydrolases 32 456 IPR029058 -
Trre2g04806 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 422 435 IPR001563 GO:0004185|GO:0006508
Trre2g04806 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Trre2g04806 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Trre2g04806 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Trre2g04806 458 FunFam Carboxypeptidase 27 289 - -
Trre2g04806 458 Gene3D - 358 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04806 Trre-Chr2 55697660 55700643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04806 321 453 Calmodulin-binding Proteins AT2G22960 29.104 2.16e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04806 K16297 - gmx:100805722 850.892