LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g04776	ATGTTTGTAGTTATGGATTCCATGGAAAAAACCTCAGAAAAGTGCTTAGATTCACAACTATGGCATGCTTGTGCTGGTGCCATGGTTCAAATGCCACCACTAAACACAAAAGTCTTTTACTTTCCACAAGGTCATGCAGAACATGCTCATGGCAAAGTAGATTTCAACAAAACTCGTGTTCCACCACTCATTCCTTGTAGAATCTCTGCTATGAAATACATGGCTGACCCTGAAACTGATGAAGTTTATGTCAAAATGAGATTAACACCTTTAAGAGAAAACGAATTAGATTTAGAAGAAGATTGTTTCTTTGGAAACAATGCTTTAGAGGGTCAAGAAAAACCAACTTCTTTTGCTAAAACATTGACACAATCTGATGCAAATAATGGTGGTGGTTTCTCTGTTCCTAGATATTGTGCTGAGACTATTTTTCCTAGATTGGATTATTCTGCAGAACCACCTGTTCAGACAATTATTGCTAAAGATATGCATGGACAGTGTTGGAAATTTAGACATATTTATAGAGGAACACCAAGGAGACATCTTTTGACAACTGGTTGGAGTAATTTTGTGAATCATAAGAAACTTGTTGCAGGTGATTCAATTGTGTTTTTGAGAGCTGAAAATGGAGATCTTTGTGTTGGTATAAGAAGAGCTAAGAAAGGTGGAATTGGTGGTGGAATTACTGATCAGTTTTCTAATTCTTCTGCTAATTGGAACCGCGTTTCGCCGATGTTTGGTGGCGGTGGTTCTGGTTTTTTGTGTGGAAATGAAAACAGAAAAAGTTGTGGTGGTAGTGGTGATGATGATTTGATTAGAAGAGTTGGTTCTGAATCTGTTGTTGAAGCTGTGAATTGTGCTATTAATGGAAGATCTTTTGAAGTTGTGTATTATCCAAGAGCTAGTACTCCTGAATTTTGTGTTAAGGTTTCTTCTGTTAAATCTGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTTAAAATGCCATTTGAAACTGAAGATTCTTCTAGGATTAGTTGGTTTATGGGAACTATTTCTTCTGTTCATGTTCAAGATCCAATTCATTGGCCTGATTCTCCTTGGCGCCTTCTTCAGGTAGTGTGGGATGAACCAGATTTACTTCAAAATGTGAAATGTGTAAACCCTTGGTTAGTTGAATTAGTCTCAAACATGCCAAATTTCAATCTTTCACCATTCACACCTCCAAGAAAAAAACCAAGATTTATTCAAGATCCATATTTTCATCTCATAAATCAGCTTCCAATGCCAACATCATCAACATCATCGTTCTCCAACATTAATCTTGTGAATTATACAAACTCTTCTCTCTGTAACATTCAAGAAAATAGTACTAATTATAGTTCATCATCAAGCTGTATACAGGGAGCCAGGCATGCTCAATTTGGATCAAATAATGATTTAATTCCTTTCAATAAGTTACAACAAGACATGTTTCTTGGAAATAATTCTGGTCAAAGTTTTAAGGAATTATCCAATATTGAAGCAAAAGTACCCAATAAACATCAAATTTTGTTATTTGGAAAACTCATTCACATTGATCAACAACAGAACAATTCAAATGTTTCAAAGAGTGGTTCTTTATTATCTGAAGAAGGAGCATCTTTGAAAACATCAAATGTTTCTTCTTCTTCTGAGAATCCAGTTGAGAATTCTTCTGATGGAGGTTCACCTTGGTATAAGGATCAACAACATGTTGGAACTGAAAATGTTACAACATTGTGTATGGCTTCATAA	1758	0.3538	MFVVMDSMEKTSEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFNKTRVPPLIPCRISAMKYMADPETDEVYVKMRLTPLRENELDLEEDCFFGNNALEGQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGITDQFSNSSANWNRVSPMFGGGGSGFLCGNENRKSCGGSGDDDLIRRVGSESVVEAVNCAINGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVQDPIHWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTPPRKKPRFIQDPYFHLINQLPMPTSSTSSFSNINLVNYTNSSLCNIQENSTNYSSSSSCIQGARHAQFGSNNDLIPFNKLQQDMFLGNNSGQSFKELSNIEAKVPNKHQILLFGKLIHIDQQQNNSNVSKSGSLLSEEGASLKTSNVSSSSENPVENSSDGGSPWYKDQQHVGTENVTTLCMAS	585

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre2g04776	585	SUPERFAMILY	DNA-binding pseudobarrel domain	114	220	IPR015300	-
Trre2g04776	585	CDD	B3_DNA	117	218	IPR003340	GO:0003677
Trre2g04776	585	Gene3D	-	320	394	-	-
Trre2g04776	585	MobiDBLite	consensus disorder prediction	540	572	-	-
Trre2g04776	585	SMART	B3_2	118	220	IPR003340	GO:0003677
Trre2g04776	585	FunFam	Auxin response factor	116	220	-	-
Trre2g04776	585	Gene3D	-	116	220	IPR015300	-
Trre2g04776	585	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	13	559	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
Trre2g04776	585	FunFam	Auxin response factor	321	394	-	-
Trre2g04776	585	ProSiteProfiles	B3 DNA-binding domain profile.	118	220	IPR003340	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g04776	Trre-Chr2	55336514	55339011	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g04776	1	568	B3 DNA Binding Superfamily	AT4G30080	54.455	0.0	575

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Trre2g04776		B3	5.3e-21	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g04776	-		-	tpra:123919517	1058.13

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