Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04776 ATGTTTGTAGTTATGGATTCCATGGAAAAAACCTCAGAAAAGTGCTTAGATTCACAACTATGGCATGCTTGTGCTGGTGCCATGGTTCAAATGCCACCACTAAACACAAAAGTCTTTTACTTTCCACAAGGTCATGCAGAACATGCTCATGGCAAAGTAGATTTCAACAAAACTCGTGTTCCACCACTCATTCCTTGTAGAATCTCTGCTATGAAATACATGGCTGACCCTGAAACTGATGAAGTTTATGTCAAAATGAGATTAACACCTTTAAGAGAAAACGAATTAGATTTAGAAGAAGATTGTTTCTTTGGAAACAATGCTTTAGAGGGTCAAGAAAAACCAACTTCTTTTGCTAAAACATTGACACAATCTGATGCAAATAATGGTGGTGGTTTCTCTGTTCCTAGATATTGTGCTGAGACTATTTTTCCTAGATTGGATTATTCTGCAGAACCACCTGTTCAGACAATTATTGCTAAAGATATGCATGGACAGTGTTGGAAATTTAGACATATTTATAGAGGAACACCAAGGAGACATCTTTTGACAACTGGTTGGAGTAATTTTGTGAATCATAAGAAACTTGTTGCAGGTGATTCAATTGTGTTTTTGAGAGCTGAAAATGGAGATCTTTGTGTTGGTATAAGAAGAGCTAAGAAAGGTGGAATTGGTGGTGGAATTACTGATCAGTTTTCTAATTCTTCTGCTAATTGGAACCGCGTTTCGCCGATGTTTGGTGGCGGTGGTTCTGGTTTTTTGTGTGGAAATGAAAACAGAAAAAGTTGTGGTGGTAGTGGTGATGATGATTTGATTAGAAGAGTTGGTTCTGAATCTGTTGTTGAAGCTGTGAATTGTGCTATTAATGGAAGATCTTTTGAAGTTGTGTATTATCCAAGAGCTAGTACTCCTGAATTTTGTGTTAAGGTTTCTTCTGTTAAATCTGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTTAAAATGCCATTTGAAACTGAAGATTCTTCTAGGATTAGTTGGTTTATGGGAACTATTTCTTCTGTTCATGTTCAAGATCCAATTCATTGGCCTGATTCTCCTTGGCGCCTTCTTCAGGTAGTGTGGGATGAACCAGATTTACTTCAAAATGTGAAATGTGTAAACCCTTGGTTAGTTGAATTAGTCTCAAACATGCCAAATTTCAATCTTTCACCATTCACACCTCCAAGAAAAAAACCAAGATTTATTCAAGATCCATATTTTCATCTCATAAATCAGCTTCCAATGCCAACATCATCAACATCATCGTTCTCCAACATTAATCTTGTGAATTATACAAACTCTTCTCTCTGTAACATTCAAGAAAATAGTACTAATTATAGTTCATCATCAAGCTGTATACAGGGAGCCAGGCATGCTCAATTTGGATCAAATAATGATTTAATTCCTTTCAATAAGTTACAACAAGACATGTTTCTTGGAAATAATTCTGGTCAAAGTTTTAAGGAATTATCCAATATTGAAGCAAAAGTACCCAATAAACATCAAATTTTGTTATTTGGAAAACTCATTCACATTGATCAACAACAGAACAATTCAAATGTTTCAAAGAGTGGTTCTTTATTATCTGAAGAAGGAGCATCTTTGAAAACATCAAATGTTTCTTCTTCTTCTGAGAATCCAGTTGAGAATTCTTCTGATGGAGGTTCACCTTGGTATAAGGATCAACAACATGTTGGAACTGAAAATGTTACAACATTGTGTATGGCTTCATAA 1758 0.3538 MFVVMDSMEKTSEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFNKTRVPPLIPCRISAMKYMADPETDEVYVKMRLTPLRENELDLEEDCFFGNNALEGQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGITDQFSNSSANWNRVSPMFGGGGSGFLCGNENRKSCGGSGDDDLIRRVGSESVVEAVNCAINGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVQDPIHWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTPPRKKPRFIQDPYFHLINQLPMPTSSTSSFSNINLVNYTNSSLCNIQENSTNYSSSSSCIQGARHAQFGSNNDLIPFNKLQQDMFLGNNSGQSFKELSNIEAKVPNKHQILLFGKLIHIDQQQNNSNVSKSGSLLSEEGASLKTSNVSSSSENPVENSSDGGSPWYKDQQHVGTENVTTLCMAS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04776 585 SUPERFAMILY DNA-binding pseudobarrel domain 114 220 IPR015300 -
Trre2g04776 585 CDD B3_DNA 117 218 IPR003340 GO:0003677
Trre2g04776 585 Gene3D - 320 394 - -
Trre2g04776 585 MobiDBLite consensus disorder prediction 540 572 - -
Trre2g04776 585 SMART B3_2 118 220 IPR003340 GO:0003677
Trre2g04776 585 FunFam Auxin response factor 116 220 - -
Trre2g04776 585 Gene3D - 116 220 IPR015300 -
Trre2g04776 585 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 559 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre2g04776 585 FunFam Auxin response factor 321 394 - -
Trre2g04776 585 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Trre2g04776 585 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Trre2g04776 585 Pfam Auxin response factor 283 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04776 Trre-Chr2 55336514 55339011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04776 1 568 B3 DNA Binding Superfamily AT4G30080 54.455 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre2g04776 B3 5.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04776 - - tpra:123919517 1058.13