Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04774 ATGCAGGGTTTGAACTTGAATTGTGAAATTATACACTCTGCCCAAGAATTTACTCAATTTCAACAAGAGAAAATGGTTGGACCAAACTTCATGGACGAATTAGACTGTGGCAGTTTCTTTGATCACATCGACGACCTCCTTGATTTCCCTGTCGACGATGTTGATACCGCTGCCGCTTCCTTGCCATCGGTCGCCTCTGTTGGAAACTGCAATTCGCTGGCGAGTATCTGGCCTAATGAGTCGGAGTCATTTCCGACTTCCGACTCGGTGTTTTCAGCCGGTAACAGTGCTTCTGACCTCTCGGCGGAACTCTCCGTTCCGTATGAAGACATTGTGCAATTGGAATGGCTGTCCAATTTTGTGGAGGACTCATTTAGTGAGGGGAGTCTCACAATGAAGAAAGTGGAGCAGCAGCCATTATCATGTGTCCCCAAGGAGGACTCTGTGCATAGCCAATTCCAGACATCAAGTCCAGTTTCTGTGCTCGAAAGCAGCAGTTCCTGCTCCGGTGGAAAGACTACTACAGGGATTTACATCCCTGTGCCATGTGGACGTGCACGCACCAAACGTCCACGTCCTGCAACTTTCAATCCTCGTTCCGCCATGCAGCTCATTTCCCCTACTTCTTCCGCGGGGGAGAATGTGCAGCCAAATGTTATCTCCACCAAGGCTGCATTTTCCGATTTTGACAATTTTGCTGAGTCTCGAATTCTGGCCAAGAAACCAAAGCTAGCTTCTGGAGAGACTAAGAAGAAAAAGAAAATCAAGATGACACTTCCTGCTGCTGCTCCAGCTGACAGTGGCGATCAGAATGGTTCGCTACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACACCACAATGGAGGGCAGGGCCAATGGGTCCAAAAACACTGTGCAATGCTTGCGGTGTTCGCTACAAGTCGGGCCGTCTTTTCCCTGAATACCGGCCTGCTGCTAGTCCAACTTTTTGTCCAGCTTTGCACTCCAATTCCCACAAGAAGGTCCTTGAAATGAGATGCAAGGATATTGAGAATCCCGGTTTTGAATCACATTCAGCTGCCTCACCCGAACTCATTCCAAACACTAACAGCATTCTCGCCCTGGAATACATTTGA 1122 0.4822 MQGLNLNCEIIHSAQEFTQFQQEKMVGPNFMDELDCGSFFDHIDDLLDFPVDDVDTAAASLPSVASVGNCNSLASIWPNESESFPTSDSVFSAGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFSEGSLTMKKVEQQPLSCVPKEDSVHSQFQTSSPVSVLESSSSCSGGKTTTGIYIPVPCGRARTKRPRPATFNPRSAMQLISPTSSAGENVQPNVISTKAAFSDFDNFAESRILAKKPKLASGETKKKKKIKMTLPAAAPADSGDQNGSLPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPALHSNSHKKVLEMRCKDIENPGFESHSAASPELIPNTNSILALEYI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04774 373 MobiDBLite consensus disorder prediction 244 270 - -
Trre2g04774 373 ProSiteProfiles GATA-type zinc finger domain profile. 273 309 IPR000679 GO:0006355|GO:0043565
Trre2g04774 373 ProSitePatterns GATA-type zinc finger domain. 279 304 IPR000679 GO:0006355|GO:0043565
Trre2g04774 373 PIRSF Txn_fac_GATA_plant 14 365 IPR016679 GO:0003677|GO:0005634|GO:0045893
Trre2g04774 373 FunFam GATA transcription factor 269 356 - -
Trre2g04774 373 Gene3D - 276 323 IPR013088 GO:0006355|GO:0008270
Trre2g04774 373 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 277 336 - -
Trre2g04774 373 SMART GATA_3 273 323 IPR000679 GO:0006355|GO:0043565
Trre2g04774 373 CDD ZnF_GATA 278 325 IPR000679 GO:0006355|GO:0043565
Trre2g04774 373 Pfam GATA zinc finger 279 312 IPR000679 GO:0006355|GO:0043565
Trre2g04774 373 PANTHER GATA TRANSCRIPTION FACTOR 31 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04774 Trre-Chr2 55315461 55318229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04774 34 347 C2C2-Gata Transcription Factor Family AT1G08010 35.873 3.73e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre2g04774 GATA 6.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04774 - - gmx:100816641 505.368