Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04759 ATGGGTAATGTTGAAATCCCTAATTGGCTTGAGGGGTTGCCACTGGCACCTGAATTTCGACCTACTGATACTGAATTTTCTGACCCAATTGCTTATATTTCAAAGATTGAGAAAGAAGCTAGTAATTTTGGGATATGCAAGATTATCCCACCCTTGCCCAAACCTTCAAAAAAATATGTTTTTTCTAATTTGAATAAGTCCCTCTTGAAGCGTCCTGAATTGGGTCTAGATAATAGTTCTTTAGGTGCTGGTAATTCTTGGAAAATGGGTTCCGATGGTAGTAATGGTGGGGTATCGCGGGCCGTGTTTACCACAAGGCAACAAGAAGTGGGGCAGAATGTGAAAAAAACCAAAGGGGGAGTTCAGAAACCATTGTCACGTGTTCATAAGCAAGTATGGCAAAGTGGAGAGGTTTATACATTGGACCAATTTGAGGCCAAATCGAAGTCTTTCGCAAGAAGCATTCTAGGTACATCGAAGGACGTTTCTCCACTGGTTGTAGAGGCTATGTTTTGGAAGGCAGCTTCGGAGAAGCCTATATATGTGGAGTATGCCAATGACGTGCCTGGCTCTGCTTTTGGAGAATCACAGGGTCAATTTTATCATAGGCAGAGAAGGCAACGGAAAAGGACTTATTATAAGAGTAGTGTAGATAGCTCTGTTTGTAAAGAAACTGAAATGGGTGGTGTAAAAGATACACAAAATGACGAGTCTAATGGCGTTGCTAGCCCAAGTAATGTGGACTCATGTTTAGAGATGTCTAAATCAGCTATGACTATGTCAACGTCTACACCAATTGAGGTGTCACAGTCTTCTAAGGAGAAGAGTTCAGATGCCGACATTGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAATAGTCCTTGGAATTTGCAAGTTATTCCTCGCGCTTCAGGCTCACTAACACGTTTCATGCCAGATGATATTCCTGGTGTTACTTCACCCATGATATACATTGGTATGTTGTTCAGTTGGTTTGCCTGGCATGTGGAGGATCATGAGCTTCACAGCTTGAATTTTCTTCACACTGGCTCATCTAAGACTTGGTATTCTGTTCCTGGAAATTATGCCTTTGCTTTTGAGGAAGTCATCCGTACAGAGGGTTATGGTGGTGATATTGATCAATTAGCTGCTTTGAAACTGTTGGGTGAGAAAACAACTCTTTTATCACCTGAGGTAGTTGTTGCATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGCGGGGAAGCTGCTAACTTTGGGACTCCACAATGGCTTGGCATAGCTAAAGAAGCTGCAGTGCGTAGAGCTACAATGAATCATCTTCCTATGCTTTCCCATCAGCAACTACTTTACTTGCTGACCATGTCTTTTATTTCAAGTGTGCCAAGAACACTATTACCTGGTGTGCGCAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAAAGAGAGATTCTAGTTAAACGAGCTTTTATAGAAGATATGCTGCAGGAAAACAAGCTGCTAGCCATTCTTCTCGGAAAAGAAGCTACTAAACAAGTTGTTTTATGGAATGCTGATTTACTACCAGATTCTGGCAAATATCGCCGGTTGCCTGATTTAGCTTCTACTTCTGAGACCTATATGGCGGACATGTCAAATGATAATATTAGTTCTGCAGATAAGAGTAGCCATTGTCTGCTTGATGAGATGAGTTTGTGCATGGAGAATCTGTCTGATTTATATGTTGGCTGTGATGAACTTCCATCTCACTTCCAAACTGATTCAGGGGCATTGGCATGTGTGGGTTGTGGAATACTTGGTTTTCCATTTATGACACTGATACAGCCAACTGAAAAATCGATAATGGAGCTTCTTCCTGACAATCATCATCTAGTTAAAAATTCCTCTCTGAATTCTGTAGCCTCCCTTCACAATGCAGTCTCAAGGGATATTTCTGTTTCTGAACTTGCTCCCGCAAAGGATTCTCAGAATCAGTCATCGAACAAGTGCAATAAATGTTGGAACACCTCCAGTAAATTTTTGAAACCGCGAATTTTCTGCTTGGAGCATGCTGTTCAAATAGTAGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTGCAATTTGTCATTCAGACTATCCGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGAAATACAAAGTGCCTTTGATTATAATGAGGTTCCAATGGATATAGCATCCCCAGAAAACTTGGCTCTGATAGATCTGGCAATTGATGGTGAAGAAGAACTTAATGAATTTGAAGACTGGACGTCCAAACTAGGCCTTAACCTGCGATTTTGTGTCAATAATATAAACAAATCTCTATGTAAACAAGTTCCTCTGACACTAGCATTAGGGATACAGTTCTATGATAAACGTCTTGGTTTATCTTTAAATTGGCATTCAAGGAAAACTCGGTCTAAAAGGTCAAACCGTTTAGCTCAGGCTAAACCTGACAGCATTCAGAGAAAGACGGATGATCCATTGCATGGAAGAATTGATGACTCCACTGCTAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGTTGTTTCTCTGTAGCAAGCACGGTCTGTGAATCCCATGAAAAGTTAAAAAATGTGTCAGCTGTTTTGAGTGGCGATCATGACATACGTGTTTCTAAAGATGAGCTTGACACAGACAATTTCAGGAGTGATTGTGCATTGTCACGTGGATCTGCTTCTGCTGCAATGTCTCCAATGCATCCCCAGAATGCTGAAGCTTCCATCTATTCAAGCTTAAATACCAGTGTCTCAGAAATTTGTGGCAAAGAGAGCCAGGGTTGTCAGGACAAGGGATATTCTGGCTCACCTGCATATGGAATAGATGGAAATACCGATGTGTTTGGAAGCAACCAAATTACAAAAGCAATTGTCATCGATAGCAAGTGTAATAGCTTAGATTTGGATGGTGAAGGGTATCAAGAACATCAGTCTGCCTTCAAAAGCAACAGCAACGGCGAAGCTGCTTTATCCACTTCATTGGTAAACCAACCTGCTCTCGCCACTGTGGGAGAAAGCAACAGCAATGTTGAAGCTGCTTTATCCACTTCTGAAGGAAAGGTTATCAATTCTATGTCATTAAAAGAGACATTCGAAGGAGAAAGTAAGTCCTCGAATGAAATGGACAGGGAACCTCTAAATGATGATAAAGCAATAAGTGAACAGACTCCTAATACAGTAAGCTTGGATGCTAAGATGCAGCAAGAACGACAGGTTGGAAAAGGTGGAGAAAAGGAATTAATTCAGTTCACTCATATTTCAGCAAAACAATTGTGTGAATCTACAAGTGGGGAGTATGCCAAGGAATTGCACGATGAAGTGATTTCAGAGTCTGCGAAGCAGAGTCAGATCCAAAATGAGAATAAAACTAATGAGGAACCTGTTTCTAGTTATGTTGCAAAAGGTGACAATAATAGTGCAACACTATCAGAAATAGGATGTTCTGAAGTTTCGGCAGAAACCTGTCCTAAAGAAGACTCCTGTATTCAATTTATTTCGAAGGCAGAAAAGGAAATGGAAATCCACCCAATTAATAGAAGCGGTGAGGAACTTTCTGTATCAATCCACGAATGTTCTAAAACTGAGAAAAAGACATGTGGTAGAGAAATCGAAAATGGAAGCGAAGTTGATCTGTTGCAAGATAATGGGAAGCTGCAAAGCTATGACTCGACTACTACAGTTCCCAGATCAAATGCTGAAAAGAAAAAAAAGAGGAAAGCGGAACACACAGCAATGGACCAATTCGATTGCAATGACTTTATAAGAAGTCCATGCGAGAGACTGAGACCAAGGGCTGGGAAGATTGCCACCACAGGCAAAAGTGGAGGGGACATCAGCCAACATAAAGAGGAAAATTCGGTAGCTAAAAGGACACGGAGGCCTCCTGAAGCATCAGTTCCTCACAAGGATAAAAAAGTAGACGTCGAAAAGCCGCACAAGGATAAAGAGGAAAATCCGGTTGCTAAAAGGACACGGAGGCCTCCTGAAGCTTCAGTTCCACACAAGGATAAAAAAGTCGATGTCAAAAAGCCGCACAAGTGTGACATTGACAATTGCCATATGAGTTTCACGACTAAAGCTGACTTACAGTTGCACAAACGTAACCTTTGCCCAGAAAAAGGGTGTGGTAAGAAAAAGTTCCGTTCCCACAAATACACGCTGATTCACCAGCGCGTTCATGAGGATGATAGGCCGTTTGAATGTCCATGGAAAGGCTGTTCCAAGTGTTTCAAGTGGGCATGGGCAATGACAGAGCATATAAGGGTGCATACTGGGGAGAAGCCTTATCAATGCAAGGTGGAGGGATGCGGCCTTTCTTTCAGATTTATATCAGATTTTAGCAGGCACAGGCGGAAAACAGGACACTATGTATAA 4488 0.4169 MGNVEIPNWLEGLPLAPEFRPTDTEFSDPIAYISKIEKEASNFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELGLDNSSLGAGNSWKMGSDGSNGGVSRAVFTTRQQEVGQNVKKTKGGVQKPLSRVHKQVWQSGEVYTLDQFEAKSKSFARSILGTSKDVSPLVVEAMFWKAASEKPIYVEYANDVPGSAFGESQGQFYHRQRRQRKRTYYKSSVDSSVCKETEMGGVKDTQNDESNGVASPSNVDSCLEMSKSAMTMSTSTPIEVSQSSKEKSSDADIDMQGTAGWKLSNSPWNLQVIPRASGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYSVPGNYAFAFEEVIRTEGYGGDIDQLAALKLLGEKTTLLSPEVVVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLGIAKEAAVRRATMNHLPMLSHQQLLYLLTMSFISSVPRTLLPGVRSSRLRDRQKEEREILVKRAFIEDMLQENKLLAILLGKEATKQVVLWNADLLPDSGKYRRLPDLASTSETYMADMSNDNISSADKSSHCLLDEMSLCMENLSDLYVGCDELPSHFQTDSGALACVGCGILGFPFMTLIQPTEKSIMELLPDNHHLVKNSSLNSVASLHNAVSRDISVSELAPAKDSQNQSSNKCNKCWNTSSKFLKPRIFCLEHAVQIVEMLQSKGGANVLAICHSDYPKIKAHARAVAEEIQSAFDYNEVPMDIASPENLALIDLAIDGEEELNEFEDWTSKLGLNLRFCVNNINKSLCKQVPLTLALGIQFYDKRLGLSLNWHSRKTRSKRSNRLAQAKPDSIQRKTDDPLHGRIDDSTAKKLIQYSRRKFKSKQSCFSVASTVCESHEKLKNVSAVLSGDHDIRVSKDELDTDNFRSDCALSRGSASAAMSPMHPQNAEASIYSSLNTSVSEICGKESQGCQDKGYSGSPAYGIDGNTDVFGSNQITKAIVIDSKCNSLDLDGEGYQEHQSAFKSNSNGEAALSTSLVNQPALATVGESNSNVEAALSTSEGKVINSMSLKETFEGESKSSNEMDREPLNDDKAISEQTPNTVSLDAKMQQERQVGKGGEKELIQFTHISAKQLCESTSGEYAKELHDEVISESAKQSQIQNENKTNEEPVSSYVAKGDNNSATLSEIGCSEVSAETCPKEDSCIQFISKAEKEMEIHPINRSGEELSVSIHECSKTEKKTCGREIENGSEVDLLQDNGKLQSYDSTTTVPRSNAEKKKKRKAEHTAMDQFDCNDFIRSPCERLRPRAGKIATTGKSGGDISQHKEENSVAKRTRRPPEASVPHKDKKVDVEKPHKDKEENPVAKRTRRPPEASVPHKDKKVDVKKPHKCDIDNCHMSFTTKADLQLHKRNLCPEKGCGKKKFRSHKYTLIHQRVHEDDRPFECPWKGCSKCFKWAWAMTEHIRVHTGEKPYQCKVEGCGLSFRFISDFSRHRRKTGHYV 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04759 1495 Pfam JmjC domain, hydroxylase 324 442 IPR003347 -
Trre2g04759 1495 SMART cupin_9 290 459 IPR003347 -
Trre2g04759 1495 Gene3D Cupin 9 463 - -
Trre2g04759 1495 ProSitePatterns Zinc finger C2H2 type domain signature. 1469 1493 IPR013087 -
Trre2g04759 1495 Gene3D Classic Zinc Finger 1463 1493 - -
Trre2g04759 1495 ProSiteProfiles Zinc finger C2H2 type domain profile. 1437 1466 IPR013087 -
Trre2g04759 1495 SUPERFAMILY beta-beta-alpha zinc fingers 1418 1473 IPR036236 -
Trre2g04759 1495 Gene3D Classic Zinc Finger 1434 1462 - -
Trre2g04759 1495 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1433 - -
Trre2g04759 1495 MobiDBLite consensus disorder prediction 232 246 - -
Trre2g04759 1495 MobiDBLite consensus disorder prediction 833 858 - -
Trre2g04759 1495 MobiDBLite consensus disorder prediction 1302 1378 - -
Trre2g04759 1495 ProSiteProfiles JmjC domain profile. 290 459 IPR003347 -
Trre2g04759 1495 SMART JmjN_1 15 55 IPR003349 -
Trre2g04759 1495 SUPERFAMILY Clavaminate synthase-like 291 455 - -
Trre2g04759 1495 MobiDBLite consensus disorder prediction 1315 1378 - -
Trre2g04759 1495 ProSitePatterns Zinc finger C2H2 type domain signature. 1439 1461 IPR013087 -
Trre2g04759 1495 MobiDBLite consensus disorder prediction 261 280 - -
Trre2g04759 1495 FunFam Probable lysine-specific demethylase ELF6 1434 1463 - -
Trre2g04759 1495 ProSiteProfiles Zinc finger C2H2 type domain profile. 1383 1412 IPR013087 -
Trre2g04759 1495 MobiDBLite consensus disorder prediction 223 246 - -
Trre2g04759 1495 MobiDBLite consensus disorder prediction 1149 1170 - -
Trre2g04759 1495 MobiDBLite consensus disorder prediction 1257 1280 - -
Trre2g04759 1495 MobiDBLite consensus disorder prediction 1068 1091 - -
Trre2g04759 1495 MobiDBLite consensus disorder prediction 1071 1088 - -
Trre2g04759 1495 Pfam jmjN domain 17 50 IPR003349 -
Trre2g04759 1495 ProSiteProfiles Zinc finger C2H2 type domain profile. 1467 1495 IPR013087 -
Trre2g04759 1495 SMART c2h2final6 1406 1431 IPR013087 -
Trre2g04759 1495 SMART c2h2final6 1383 1405 IPR013087 -
Trre2g04759 1495 SMART c2h2final6 1437 1461 IPR013087 -
Trre2g04759 1495 SMART c2h2final6 1467 1493 IPR013087 -
Trre2g04759 1495 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04759 Trre-Chr2 55151749 55159881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04759 1 874 C2H2 Transcription Factor Family AT5G04240 54.978 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g04759 JmjC 1.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04759 - - gmx:100819845 1934.84