Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g04712 | ATGGCAACAAATAGATTTATATGTGAGGTTTGTAATAAAGGGTTTCAAAGGGAACAAAATCTTCAACTTCATAGAAGAGGACATAATCTTCCTTGGAAGCTAAAACAAAAGTCTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCTGAGCCCACATGTGTTCATCATGAACCTTCAAGAGCTTTAGGAGATCTCACTGGGATTAAGAAGCATTACTCTCGTAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAATGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTCATTACTCATAGAGCATTTTGTGATGCATTAGCACAAGAGAGTGCATTAAGACACCCTAACCCTTTTGGAAATACTCATAATAATTTCTATTCCACAACAAACACAAGCCATCACATGAGTTTAGGCCAAATTTCCCATCAATTGCAAAATCATCAAAACCAAACTAATAACAACATTTTGCGCCTTGGATCATCATCATCATCATTATCATCAACACCAAAATTTGAACAACAATTAATCTCATCACAACAATCTTTAAATCATCACTCTTCATTTAGTCCATTCTTCATGAATGATATTCCAAATCAATCATCATCATCATTTGATCAAGAACACCAATTCACAAACAAACAACTTCATGGTCTAATGCAACTTCCTGATCTTCAAGGAAATAACACAAACAATAATGTTTTCAACCTCATGAATAATATTCATGATCATCATCAATTCAACAACCCTCTAATCTTTGATCAAAACATGTCTAGTGATCCTAACATGTCAGCAACTGCATTGCTTCAAAAAGCTTCTCAAATTGGTTCAACAAATTCAACCAACAACAACAAAGGTAACACTAATAACTCTTTTGGAAATAGAAGTTCAAGTATGGAAAATGATCATGACAACAATGATGAACTTCATGGATTAATAAACTCTATTGCAAATGGAAACACATCATCATCCATATTTGGCAATGATGATGAAAACAACCTTAATATGAGGTTTGGTGGATCTGATAAGTTAACTTTAGATTTTCTTGGTGTTGGTGGAATGGTTAGAAACATGAATAGTGGTGCTGGATTTTCACAACATGCTATGAATACTAGTATGGCTTCTTTGAATCATGACCTAAAATCAGTTCAGTCAAGTCAAAGTCAAAGTCAACATTTTGGAAGCTCAAATTTCATGCAATGA | 1281 | 0.3443 | MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESALRHPNPFGNTHNNFYSTTNTSHHMSLGQISHQLQNHQNQTNNNILRLGSSSSSLSSTPKFEQQLISSQQSLNHHSSFSPFFMNDIPNQSSSSFDQEHQFTNKQLHGLMQLPDLQGNNTNNNVFNLMNNIHDHHQFNNPLIFDQNMSSDPNMSATALLQKASQIGSTNSTNNNKGNTNNSFGNRSSSMENDHDNNDELHGLINSIANGNTSSSIFGNDDENNLNMRFGGSDKLTLDFLGVGGMVRNMNSGAGFSQHAMNTSMASLNHDLKSVQSSQSQSQHFGSSNFMQ | 426 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g04712 | 426 | Gene3D | Classic Zinc Finger | 58 | 139 | - | - | |
Trre2g04712 | 426 | MobiDBLite | consensus disorder prediction | 301 | 337 | - | - | |
Trre2g04712 | 426 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 28 | IPR013087 | - | |
Trre2g04712 | 426 | FunFam | Zinc finger protein MAGPIE | 2 | 29 | - | - | |
Trre2g04712 | 426 | SUPERFAMILY | beta-beta-alpha zinc fingers | 5 | 102 | IPR036236 | - | |
Trre2g04712 | 426 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 6 | 28 | IPR013087 | - | |
Trre2g04712 | 426 | Pfam | Zinc-finger double-stranded RNA-binding | 6 | 28 | IPR022755 | - | |
Trre2g04712 | 426 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 397 | IPR031140 | - | |
Trre2g04712 | 426 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 60 | 139 | - | - | |
Trre2g04712 | 426 | SMART | c2h2final6 | 6 | 28 | IPR013087 | - | |
Trre2g04712 | 426 | SMART | c2h2final6 | 82 | 102 | IPR013087 | - | |
Trre2g04712 | 426 | SMART | c2h2final6 | 47 | 77 | IPR013087 | - | |
Trre2g04712 | 426 | MobiDBLite | consensus disorder prediction | 301 | 325 | - | - | |
Trre2g04712 | 426 | MobiDBLite | consensus disorder prediction | 406 | 426 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g04712 | Trre-Chr2 | 54769741 | 54772840 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g04712 | 1 | 407 | C2H2 Transcription Factor Family | AT2G02080 | 49.672 | 5.06e-120 | 355 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre2g04712 | zf-C2H2_jaz | 2.5e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g04712 | K25870 | - | gmx:102663407 | 446.047 |