Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04710 ATGAGTGAAGAATGTGGGGGAAACACTATTGCTACATCTACTACACCATTAAATTGGTGGTATCTTCAAGCTTCAAATTCTCTTTCTTCTAATTGGAATGATGTTAATAAACATGCATGGAATAACCAAATAAATAATCCCAATTCTTCATCTTCTTGTGAAGATCAAGATATATCTGTTTCTTCAACATCATTCACTAATGCTTCCAATCATTCAAGTCTCACCGTTGAATCATCTCGAAGAGTATTCGTTGAGCCACATGCACCACCTTCCTCCAACGACTTCATGGCCGAACATGCTTCGGATAACCAACTTTGGAATCATGTTCTATCAGGTGTTGGATCAAATGGAGAATTACACAACAACCAAGAAATTGGAGAGAATTTCTTGGATGGACTTGCATCAAAAACCATGACAAACACTATGTTTGACCAACCAGCTTGTGATTATTTGAAGAAACTTGATACAACAAGTTGGGAATATACTAATGGTTCAAATTCTTCATTCAACACAAGTTTTGAGAAGCACTTAAATGGATACAGTGAAGCTCTAATTGAAAATAATGAAAGGTTGACAAAATTATCCAATCTTGTTAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGCAGCCACTTTGATCCACAAACAAACAATAATATGTCAAATAATTTGAATAATTCTTCATCCAATATGGATAATCATCACTATGAATCTGACCCTAATTGTCATTTCAAACAATTACCTTTTGGAGATTCCACATCATGTACTATTGGAGGAGGAGGAGTAGGTAATAAAATGTTCCCTAATTTTCATGATCAAGACATGAATAAGGTTAAGCAAGAATATCATCATAATCATGCAAGTGAAGTGATGCAACAAGGACATGTATTTGGAAAATCATTTAATCCAAATGGTTATCTTGATGGTTTCAATAGTAGACTTAATTCAATGGGAGACAACAATGGAAAATTTTATCAAGGGTTGCCAAATATTTCACCATGCACAAAAAATTTCTCAGATGTTATATCCTTTAATAGTAGGTTTGGAAGGCCAATTCTTGGAATCCATGCACAAAAGCCTAGCATGAAATACTCAAACTTACCCGAGTTAAAGAAGCAAGGGCTTCAAACACCATCACATATGAGAAATAGTAATGGAAAAGGAGAGGGGACAACACGTGAAATAAAGAAGAAAAGATCCGAAGAATCATCAGAAGCAAGTTTGAAGAAGTCTAAACAAGATACATCAACAACAAATTCATCTTCAAAGGTGCAAGCACCTAAAGTCAAGCTAGGAGACAAGATCACAGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACAGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTATCTTGAAGAACAAGTCCAGTTACTGAGCAACCCTTACTTGAAGGCAAATTCACACAAGGACCCAAGGGGAAGCTACTTCGATAGAAAAGATAAGGAAGATACAAAGATGGACCTTCGAAGCAGAGGTCTATGTTTAGTTCCAACTTCATGTACACCTTTAGTTTATAGAGAGAACACTGGACCAGATTACTGGACACCAGCATATAGAGGATGTTTGTATAGGTAA 1620 0.3642 MSEECGGNTIATSTTPLNWWYLQASNSLSSNWNDVNKHAWNNQINNPNSSSSCEDQDISVSSTSFTNASNHSSLTVESSRRVFVEPHAPPSSNDFMAEHASDNQLWNHVLSGVGSNGELHNNQEIGENFLDGLASKTMTNTMFDQPACDYLKKLDTTSWEYTNGSNSSFNTSFEKHLNGYSEALIENNERLTKLSNLVSTWSIAPPDPEVSSHFDPQTNNNMSNNLNNSSSNMDNHHYESDPNCHFKQLPFGDSTSCTIGGGGVGNKMFPNFHDQDMNKVKQEYHHNHASEVMQQGHVFGKSFNPNGYLDGFNSRLNSMGDNNGKFYQGLPNISPCTKNFSDVISFNSRFGRPILGIHAQKPSMKYSNLPELKKQGLQTPSHMRNSNGKGEGTTREIKKKRSEESSEASLKKSKQDTSTTNSSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKYLEEQVQLLSNPYLKANSHKDPRGSYFDRKDKEDTKMDLRSRGLCLVPTSCTPLVYRENTGPDYWTPAYRGCLYR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04710 539 CDD bHLH_AtbHLH_like 432 474 IPR045239 -
Trre2g04710 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 417 466 IPR011598 GO:0046983
Trre2g04710 539 MobiDBLite consensus disorder prediction 412 428 - -
Trre2g04710 539 MobiDBLite consensus disorder prediction 375 429 - -
Trre2g04710 539 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 216 517 - -
Trre2g04710 539 MobiDBLite consensus disorder prediction 389 411 - -
Trre2g04710 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 432 481 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04710 Trre-Chr2 54736867 54741352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04710 337 539 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 43.478 1.46e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04710 - - tpra:123920059 998.038