Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04708 ATGGCTAGGATTAAACCTCAGGCTCTGTTACAGCAAAGCAAAAGGAAGAAAGGACCTTCTCGCATAAGTGCGGCGTCTATTATATTTTACGCTTTGATTCTTGTCTTGGTTGGTTTTTTCCTTTTGGCTACATACAGATATTGGTCTAACAGGTCAAGGTTGCAATCAGAAAGTCACTTGACAGTATCTGATGAGGGTGACAATAGTTTTGTGGACTCGAAGAAATCTGATCTACCTGGATATGCTGTTTTAAATACCTCTAAAGGGTCTATAATAGTAGAATTGTACAAGGAAAGTGCTCCTGAAGCCGTTGATGAATTTATTGACTTATGTCAAAAAGGGCACTTCAAAGGGATGCTTTTTAAACGCGTAATCAAGCATTACGTTATTCAGGCAGGGGATGGCCAGGGAACAGGAGCAGCTGATTGGAACTTAAGAGGAAAGCAACCTGCAAGTATGAAACACGAAGCGTTCATGCTTGGAACATCCAAGGGAAAACACACCAACAAAGGATTTGATCTTTTCATTACAACTGCACCGATACCAGATCTTAACGAGAAACTTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTTCAGGAAATTGAAGAAGTGGATACTGATGAACATTACACTCCTAAAATATCTATTGGGATACTTGATGTGACTCTCGAACAAAAGATCTAA 693 0.3997 MARIKPQALLQQSKRKKGPSRISAASIIFYALILVLVGFFLLATYRYWSNRSRLQSESHLTVSDEGDNSFVDSKKSDLPGYAVLNTSKGSIIVELYKESAPEAVDEFIDLCQKGHFKGMLFKRVIKHYVIQAGDGQGTGAADWNLRGKQPASMKHEAFMLGTSKGKHTNKGFDLFITTAPIPDLNEKLIVFGQVIKGEDVVQEIEEVDTDEHYTPKISIGILDVTLEQKI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04708 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 230 - -
Trre2g04708 230 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 83 224 IPR002130 GO:0000413|GO:0003755
Trre2g04708 230 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 78 226 IPR002130 GO:0000413|GO:0003755
Trre2g04708 230 SUPERFAMILY Cyclophilin-like 78 226 IPR029000 -
Trre2g04708 230 CDD cyclophilin 83 223 - -
Trre2g04708 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Trre2g04708 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 95 110 IPR002130 GO:0000413|GO:0003755
Trre2g04708 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Trre2g04708 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Trre2g04708 230 Gene3D - 67 230 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04708 Trre-Chr2 54698648 54702448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04708 80 226 U-box Gene Family AT5G67530 33.117 5.11e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04708 - - gmx:100781538 390.578