Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04680 ATGTTAGCTCATGCCTTTCTTTTCACCTTCACTCTTCTCCTTGTTCTCAACCTTGATCGTTTCTTCCTTTTCTCATGGTGGACCGTGTTTTTGCCTCTTTGGCTGTTTCATGTGGTTGTAGCACGAGGCAGGTTTTCCTTGCCTGCTCCTTCAATTCCTCATGGTCGCCAATGGGCACCTTGTCATTCAGTTATAGCAACACCATTACTTGTGGCATTTGAGCTTCTTCTGTGTATACATCTTGGTAGCAGTTATGTTGTGAATTTGAAGATTGTCTTCATACCTCTTATAGCTTTCGAATTGGTGATTTTGATCGATAACATCAGGATGTGTAGGGCTTTGATGCCTGGAGATGAGGAAAATATGACGGATGAAGCAGTATGGGAAACTCTTCCTCATTTCTGGATTTCGATATCCATGGTCTTCTTTATTGCTGCCACAGTGTTCACCCTTCTAAAGATATGTGGTGATGTTGCTGCTCTTGGCTGGTGGGACTTGTTTATAAACTATGGCATTGCACAGTGCTTTGCGTTTCTTGTATGTACAAAGTGGCACAATCCTACAATTCATGGAAACGGTCACATTACAGAACCATGTTCGTCGTCAAATACCATAAGATATTTGGAATGGAGTAGAGAAGGCATAGTTATTTCTACCGATGAAGATGGGGAGCAAAACGCGTTTTGCAGTCTGCAGGACATAGGCGGACATATAATGAAAATTCCATTCATTGCTTTCCAAATATTACTTTTTATGCATTTAGAGGGAACACCACCGGGTGCAAAAGATATCCCAATTTGGGTAATTTTTTCTCCGCTTTTACTGTTGCAAGGAGCTGGAGTATTATTTGCAGCATATAGATTAATAGAGAAGATTGTTCTTTTACTCCATCACGGGGATATTCCTAGGAGCTACTCGTCTATAGCATCAAAATCCCGTGACTGCTTTGGGTTTTTTCATCATGGATCAAGGTTGTTAGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTTCTGTGCCGGGAATTCTGGGTATAATACTTTCTCCCCCGATACAGTGAAGAAGATGCCTAGAGGTGAACTTGTCGATGAGATTTGGAGACTTCAAGCTGCACTTGGCGAGCAGACAGAAGTTACAAAATATAGCCAGGAGGAATATGAAAAACTTCAAAATGAGAAGATCTTATGCAGAGTTTGTTTTGAAGAGCAGATTAATGTGGTCCTCCTTCCCTGTAAGCATCACATTCTTTGCAGCACCTGCTGCGAAAAATGCAAGAAGTGTCCTATCTGCCGTGGAACAATTGAAGAACGGATGCCTGTATATGATGTGTAG 1347 0.4165 MLAHAFLFTFTLLLVLNLDRFFLFSWWTVFLPLWLFHVVVARGRFSLPAPSIPHGRQWAPCHSVIATPLLVAFELLLCIHLGSSYVVNLKIVFIPLIAFELVILIDNIRMCRALMPGDEENMTDEAVWETLPHFWISISMVFFIAATVFTLLKICGDVAALGWWDLFINYGIAQCFAFLVCTKWHNPTIHGNGHITEPCSSSNTIRYLEWSREGIVISTDEDGEQNAFCSLQDIGGHIMKIPFIAFQILLFMHLEGTPPGAKDIPIWVIFSPLLLLQGAGVLFAAYRLIEKIVLLLHHGDIPRSYSSIASKSRDCFGFFHHGSRLLGWWSIDEGSREEEARLFCAGNSGYNTFSPDTVKKMPRGELVDEIWRLQAALGEQTEVTKYSQEEYEKLQNEKILCRVCFEEQINVVLLPCKHHILCSTCCEKCKKCPICRGTIEERMPVYDV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04680 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 447 IPR013083 -
Trre2g04680 448 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 2 448 - -
Trre2g04680 448 ProSiteProfiles Zinc finger RING-type profile. 401 436 IPR001841 -
Trre2g04680 448 FunFam Kinesin-like protein KIN-7D, mitochondrial 378 446 - -
Trre2g04680 448 SUPERFAMILY RING/U-box 391 443 - -
Trre2g04680 448 Pfam Transmembrane Fragile-X-F protein 16 276 IPR019396 -
Trre2g04680 448 Pfam Zinc finger, C3HC4 type (RING finger) 399 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04680 Trre-Chr2 54353865 54359085 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04680 2 448 C3H Transcription Factor Family AT1G73950 64.176 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04680 - - gmx:113000756 777.704