Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04677 ATGGCTGGAGTATCATGGTTGGTCGATAAGAAAACAATTGCAACGAGAATTAAGTATGCATCAACAGAAACCGCTGAAGTTCATTTCGAAAGCAACCCTTGCATATCTTGCCCGAATTGTCAACACGTTATTGACAACAACAATTTAAAACAACAATTTCCTGGATTACCAAGAGGTGTTAAATTTGATCCATCGGATCAAGACATAATGTCACATTTGCTCGCAAAAGTTGGTGTAGGAGACTCCGAACCGCACCCTTTCATCGATGAATTTATCACTACAATAGAAGAGGATGGTGGTATTTGTTATACTCATCCTCAACATTTACCAGGTGTTTCACAAGATGGAAGTGTTGCACATTTTTTCCACAAAGCCATAAAAGCATATAACTCTGGAGGCCGTAAGCGTAGAAGATTATTTGTCCAAGATTTCGGAGATCTTCGCTGGCATAAAACCGGGAAAACTAGACCGATCTTCGTGGATGGAATCCAAAGAGGCTGCAAGAAAATCATGGTTCTATACATGACACCAACAGATGGAGGGAATGCTGAGAAGACAAATTGGGTTGTCCACCAATATCACATTGGAAGAGAAGAGGATGAAAAGGAGGGAGAGTATGTTATCTCCAAAATATTTTACCAGCAGCAAGTGAAATTAGGTAAAAAAAATGATCAAGATGTTCCTGAAACCAGTGAAGCAAGTATTGCAAGAGTTGTTGATCCAGTTACTCCTAATTTTGTGACTCCTGAACTTCATTGTAACAAAAAACAATGCTCAGATATGAATCAAGAACAAGAATCTCAACAAGAACCTCAACACATTTCTCAGATTTTGCCAAATATTACTCATCGATGGCTACTTGATAGTCAGGGTGACCATGGAGAATGCTCACATATGAACCAAGAACAAGAATCTCATCATATGAATCAAGAACAAGAATTTCATCACATGAATCAAGAACAAGAACCTCAGCATTTTTCTCAGATTTTACCAAATCTACAATGGCTACTTGATAGCCAGGATGACTATGAAGAGCTTCCAAACATTGACCTGTCGATGGTTGAATCTCAAAATATTGAAGGGATTGATGACGTTGACCTATCTTTGACTCTATTTAGTTCACAACAATTTGCAGAAGAATCTCCATTGTTGTTTGATTACCTTCAAAATCAGTCTCCTAAAAGGAATGTGGAATTAGACAAACAACAAATGGAACAACCTAGTCTTTCTGGATTTGCTCATCTAGGAGCAGAGGAGCAATCGAAGAAAGATTCCGGAGAGTGTCAAAATCCTCACCTTGACACTACGAAGAACAATGTCGGAGATTGTCAAAATTCAGACCGTGGCACCGGAAATGTTGAGCTTAACCCTCAATCGTCCGATTTGCATTTAAGTCAGCTGGACTTTAGCTCACAAGACAGCTACATTGCTTGGGGTGGTAGCATTAGCAAGATATTTAAGTAA 1464 0.39 MAGVSWLVDKKTIATRIKYASTETAEVHFESNPCISCPNCQHVIDNNNLKQQFPGLPRGVKFDPSDQDIMSHLLAKVGVGDSEPHPFIDEFITTIEEDGGICYTHPQHLPGVSQDGSVAHFFHKAIKAYNSGGRKRRRLFVQDFGDLRWHKTGKTRPIFVDGIQRGCKKIMVLYMTPTDGGNAEKTNWVVHQYHIGREEDEKEGEYVISKIFYQQQVKLGKKNDQDVPETSEASIARVVDPVTPNFVTPELHCNKKQCSDMNQEQESQQEPQHISQILPNITHRWLLDSQGDHGECSHMNQEQESHHMNQEQEFHHMNQEQEPQHFSQILPNLQWLLDSQDDYEELPNIDLSMVESQNIEGIDDVDLSLTLFSSQQFAEESPLLFDYLQNQSPKRNVELDKQQMEQPSLSGFAHLGAEEQSKKDSGECQNPHLDTTKNNVGDCQNSDRGTGNVELNPQSSDLHLSQLDFSSQDSYIAWGGSISKIFK 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04677 487 FunFam NAC domain-containing protein 8 65 218 - -
Trre2g04677 487 MobiDBLite consensus disorder prediction 431 452 - -
Trre2g04677 487 Pfam No apical meristem (NAM) protein 57 195 IPR003441 GO:0003677|GO:0006355
Trre2g04677 487 MobiDBLite consensus disorder prediction 417 452 - -
Trre2g04677 487 SUPERFAMILY NAC domain 41 214 IPR036093 GO:0003677|GO:0006355
Trre2g04677 487 MobiDBLite consensus disorder prediction 290 320 - -
Trre2g04677 487 Gene3D NAC domain 65 218 IPR036093 GO:0003677|GO:0006355
Trre2g04677 487 MobiDBLite consensus disorder prediction 290 324 - -
Trre2g04677 487 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 316 IPR044799 GO:0003700
Trre2g04677 487 ProSiteProfiles NAC domain profile. 56 214 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04677 Trre-Chr2 54325676 54330847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04677 32 218 NAC Transcription Factor Family AT1G28470 52.332 1.06e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre2g04677 NAM 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04677 - - mtr:11406966 551.592