Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04669 ATGGAATTAGGAGGCAGTTGCACAGATGAAACAACCATCACCACCACCATCTCCACCACAAGCAATGACTCTCTTTCGGTATCTCTCATTCCGGCGAAACTATCACCACTGCCGACGAATACATTAAGCCGCGTCGGCAGTGGTGCTAGCGCCGTCGTGGATCCCGAAATTTGCGGCGGATCCGGTGAGGCTGAGTCTCGTAAACTTCCGTCATCGAAATACAAAGGCGTTGTTCCACAGCCGAACGGACGTTGGGGAGCTCAGATTTACGAGAAACATCAGCGCGTGTGGCTTGGTACATTCAATGAAGAAGATGAAGCCGCAAGAGCATACGATATCGCCGCTTTGAGATTTCGCGGAAAAGACGCCGTTACAAATTCTAAAACTCTCACCGGCGCCGGTAACGATACCGATGAAGCTGAAGCCGAGTTTCTGAACTCACATTCCAAATCTGAGATCGTTGATATGCTAAGAAAACATACCTACGACGATGAGCTTAAGCAGAGCATGCGTGACACGTGCGGCGGAAGACAGCGGCGCAACGGAGAATTATCTGGTGCAGCGTCACGTGGCGCGTGTGATGCTAAAGCGCGTGAGCAGTTGTTTGAGAAAACGGTTACGCCAAGTGACGTTGGGAAATTGAATCGGTTGGTGATACCTAAACAGCACGCGGAGAAGCACTTTCCGTTAAATACTGTTGCAGTTGCCGTCTCCGGTAACGGAATCTCGCCGTCAGTGGCGGCGGCGAAGGGTTTACTTTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCTTATTGGAACAGTAGCCAAAGTTACGTTTTAACCAAAGGATGGAGCCGGTTCGTTAAAGAGAAGAATCTCCGAGCCGGTGATGCGGTTCGGTTTTTTAGATCGACCGGACCGGATAGACAGCTCTACATTGACTGTAAAGCAAGGAGCAGGAGTAGTGTTGTCGGTGTCGGTATTGGTGAAGTTGATAGTAATAAAACCGGTGGTTTATTTATTTCGGTCCGACCGGTAGTTGAACCGGTTCAGATGGTTCGGCTTTTTGGGGTGAATCTTTTGAAACTACCTGGTTCTGATGGTACTGTTGGTGGTAGCTGCAATGGAAAGAGAAAAGAAATGGAATTTTTTGCTTTAGAATGCAGCAAAAAACCAAAGATAATTGGAGCATTATAG 1194 0.4832 MELGGSCTDETTITTTISTTSNDSLSVSLIPAKLSPLPTNTLSRVGSGASAVVDPEICGGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGKDAVTNSKTLTGAGNDTDEAEAEFLNSHSKSEIVDMLRKHTYDDELKQSMRDTCGGRQRRNGELSGAASRGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLNTVAVAVSGNGISPSVAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFRSTGPDRQLYIDCKARSRSSVVGVGIGEVDSNKTGGLFISVRPVVEPVQMVRLFGVNLLKLPGSDGTVGGSCNGKRKEMEFFALECSKKPKIIGAL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04669 397 CDD AP2 72 126 IPR001471 GO:0003700|GO:0006355
Trre2g04669 397 ProSiteProfiles B3 DNA-binding domain profile. 202 318 IPR003340 GO:0003677
Trre2g04669 397 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
Trre2g04669 397 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Trre2g04669 397 SUPERFAMILY DNA-binding domain 72 126 IPR016177 GO:0003677
Trre2g04669 397 Gene3D - 191 325 IPR015300 -
Trre2g04669 397 SMART B3_2 202 317 IPR003340 GO:0003677
Trre2g04669 397 MobiDBLite consensus disorder prediction 172 191 - -
Trre2g04669 397 CDD B3_DNA 201 303 IPR003340 GO:0003677
Trre2g04669 397 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Trre2g04669 397 FunFam AP2 domain-containing protein RAP2.8 72 129 - -
Trre2g04669 397 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
Trre2g04669 397 SUPERFAMILY DNA-binding pseudobarrel domain 200 316 IPR015300 -
Trre2g04669 397 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 68 370 IPR044800 GO:0003700
Trre2g04669 397 Pfam B3 DNA binding domain 202 308 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04669 Trre-Chr2 54218890 54220083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04669 6 397 B3 DNA Binding Superfamily AT1G25560 56.391 1.72e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Trre2g04669 B3 2.1e-25 CL0405