Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04668 ATGCAAACTCATTACTCATTATCATGTCTTAGTACTAGTGATAGTGTCTCCTGCAGCAGTTTAGAAGATGAAGATTCCATTTTCCTTTCTCTTGCACCTCCTGGCCACCAACAATTACCACCTGCACCTCCCAAACTCTCATCCACTACTATCATCCCTCCTACCCTTCAACAAAACACTGTTTCACTCTCTCCTCTTCATGACCATACTTTTGCTCTAAATGTAGCACTTACTTCCCCTCTTCTCCACACTTCCAAACCACCTCACACTCCCATTCCTCAATACTGGATCCCTTCTCCTTCTCAAATCCTTATTGGTCCAACCCAATTCTCTTGTTCTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGAAAAGGACCTGAATCTCTAAAAGGGACAAAACCAACATCATCAACTTCATCAATGTTGAAACTACCCTGCTATTGTTGTGCTGAGGGATGCAAAAACAACATAAACTATCCAAGATCAATTTCAAGACCATTGAAAGATTTTAGGACACTTCAAACACACTACAAGAGGAAACATGGAGGGAAATCATTTGAGTGCAGGAAGTGTAGGAAACCATTTGCTGTTAGAGGAGATTGGAGAACACATGAGAAAAATTGTGGCAAACTTTGGTTCTGTATCTGTGGTTCTGATTTTAAACATAAAAGATCACTTAAAGATCATGTTCGTGCTTTTGGTAATGGCCATGCTCCACATACATTGGAATCTTTTAGCTTTGATCATGAATACAAAGCAAATGAAAATTTCAAGGAAGAAGAAGAAAGTGGAAGTGAAGATCAAGATGAAGAAGATAATAACAGTGAAGTTGCATTTACTTTCAACTAA 891 0.3906 MQTHYSLSCLSTSDSVSCSSLEDEDSIFLSLAPPGHQQLPPAPPKLSSTTIIPPTLQQNTVSLSPLHDHTFALNVALTSPLLHTSKPPHTPIPQYWIPSPSQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGTKPTSSTSSMLKLPCYCCAEGCKNNINYPRSISRPLKDFRTLQTHYKRKHGGKSFECRKCRKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESFSFDHEYKANENFKEEEESGSEDQDEEDNNSEVAFTFN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04668 296 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Trre2g04668 296 SMART c2h2final6 110 132 IPR013087 -
Trre2g04668 296 SMART c2h2final6 161 195 IPR013087 -
Trre2g04668 296 SMART c2h2final6 200 220 IPR013087 -
Trre2g04668 296 Pfam Zinc finger, C2H2 type 110 129 IPR013087 -
Trre2g04668 296 MobiDBLite consensus disorder prediction 269 296 - -
Trre2g04668 296 MobiDBLite consensus disorder prediction 274 288 - -
Trre2g04668 296 Gene3D Classic Zinc Finger 109 132 - -
Trre2g04668 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Trre2g04668 296 PANTHER ZINC FINGER PROTEIN WIP2 86 277 IPR043584 GO:0003700|GO:0010468
Trre2g04668 296 SUPERFAMILY beta-beta-alpha zinc fingers 88 131 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04668 Trre-Chr2 54207092 54208236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04668 23 256 C2H2 Transcription Factor Family AT1G13290 66.390 1.02e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g04668 zf-C2H2 0.011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04668 - - mtr:25484895 417.927