Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04666 ATGTTTTCTACCCTCACAATGCAGCGTTTCAAAATGGGTTTCTCTGATTACATCCAAGCATTAGAAGAAGAACGACGTAAGATTCAAGTTTTCCCCAAAGAACTACCCCTTTCTTTAGAACTCGTTACACAAGCTATTGAAGCTTGTAGACAGCAATTGTCTGGAACAACAACTGAGTATAATTTGAATGGACAACAATCTGAGTGTTCTGAACAGACAACATCAACAGATGGACCTGTTTTGGAAGAGTTTATACCAATTAAGAAAAGGGCTTCTCCTTATTGTGAACAAGTTTATGATGATGAAGATGAAGAAGATGATGAACAACATTCTCATCATAAACAACAAAAGATTTCAATGGATAAGAAGAAATCTGATTGGCTTAGATCTGTTCAGTTATGGAATCCAGATCCTCCTTCTCATGAGGATGTTACTAGGAAAGTAGTACTACCACCTGTGTTGGAATTGAAGAGAAATGGAAGTGGTGGTGGTGGTGCTTTTCATCCATTTCAAAAAGATGAAAGAGTTAACAATAATAAGACATGTGAATTGTTGAGTAAAGGACAACCCTCTTCGATCGGTGTAGCTGCTGCGAGTTCTAATGCGGCTACTGTTACAACCAGTAACAATGCTGGAAACTGTAAAAGAGATGAGAAAGAGGAAAAGAGAAAGCAGCGCCGGTGCTGGTCGCAGGAGTTGCACAAGCGTTTCTTACAGGCACTTCAACAACTTGGAGGTGCAGATTCTGCAACACCAAAGCAAATTAGAGAGCTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATATCGTTTGCATACAAGACGACCAAGTCCATCAAACAACGAAAGTGCCAATTCACAAACAGCAGCACCTTTTGTCCTTGTAGGGAACATTTTTGTCCAACAACAAGAGTATGGTGGGGTAGCATCATCAACAACATCAGGGGAAATGACAAAGGTTGTAGCACCTTCTGGTGGAATCTATGCACCAGTAGCCACACATCCTCCTCCAGCCGCTACAATTAAGAAGCCAGAGTTTAAAATGTTTGAGCATTCAATCTCAGAAGAAAGAGCTAATAATAAAAGTGAAGGTGCTGTTCATTCAAATTCACCTACATCATCATCTTCTACACATAATACTACCAATACTTCCCTTTGCTATTGA 1185 0.3966 MFSTLTMQRFKMGFSDYIQALEEERRKIQVFPKELPLSLELVTQAIEACRQQLSGTTTEYNLNGQQSECSEQTTSTDGPVLEEFIPIKKRASPYCEQVYDDEDEEDDEQHSHHKQQKISMDKKKSDWLRSVQLWNPDPPSHEDVTRKVVLPPVLELKRNGSGGGGAFHPFQKDERVNNNKTCELLSKGQPSSIGVAAASSNAATVTTSNNAGNCKRDEKEEKRKQRRCWSQELHKRFLQALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPSNNESANSQTAAPFVLVGNIFVQQQEYGGVASSTTSGEMTKVVAPSGGIYAPVATHPPPAATIKKPEFKMFEHSISEERANNKSEGAVHSNSPTSSSSTHNTTNTSLCY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04666 394 MobiDBLite consensus disorder prediction 107 123 - -
Trre2g04666 394 NCBIfam myb-like DNA-binding domain, SHAQKYF class 224 279 IPR006447 GO:0003677
Trre2g04666 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 221 281 IPR017930 -
Trre2g04666 394 MobiDBLite consensus disorder prediction 100 123 - -
Trre2g04666 394 MobiDBLite consensus disorder prediction 370 394 - -
Trre2g04666 394 MobiDBLite consensus disorder prediction 363 394 - -
Trre2g04666 394 Gene3D - 223 281 - -
Trre2g04666 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 365 IPR044787 GO:0003700|GO:0006355
Trre2g04666 394 Pfam Myb-like DNA-binding domain 226 277 IPR001005 -
Trre2g04666 394 SUPERFAMILY Homeodomain-like 222 282 IPR009057 -
Trre2g04666 394 FunFam Myb family transcription factor 223 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04666 Trre-Chr2 54178771 54180620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04666 16 350 G2-like Transcription Factor Family AT1G68670 46.243 5.17e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre2g04666 Myb_DNA-binding 2.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04666 - - aprc:113872943 460.299