Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04654 ATGGAAGTAATTCTGTCTCTTTCAGTTACATTCACCAAATTTCAAACCTTTCCCTCTCTCAAACCAAACAAAACCCCAATTCACCAACTTCCAATAAACACAATACAACCCAACAAAAAAAATCACTCTTTTTCTTGTCCCATTTCATCTAATCCCTCTTTTACTAGAATTTCAGCAACAACTAGCCAATCATCAACTTCACAAACCGATATGTTATTGTTCCCTGCTGGAAATTCAAAGCATTGGGTTGTTAGAATGGATAAACCTGTTGTTGGTGTTGTTACCAAAGCTCAAATTGTTGATCATTATGCTCAAATTTTGACCAAAGTTATGGGAAATGAGAAAGATGCACAAATGTGGATATATCATGTTTCTTGGAAAAACAATTTTGGCTTTTGTTGTGAACTTGATGAGGATTGTGCCAATGACTTAGCTGGTGTTCCTGGTGTCTTGTCAGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAAGATTATGAAGGTAGAAACTTAGAAAATAGTTTGAATATGGCAAATTCTTCTGAAGCAAGTCAGGAAGTTTCGGTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCCGAGAAAACCTTACGTGCCGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATCATCGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTATTGAATACACCACCGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACTACTCCTCCAAGATACAATAAGAGTCGAGCCAGACCATCTGCTTCATAA 858 0.3706 MEVILSLSVTFTKFQTFPSLKPNKTPIHQLPINTIQPNKKNHSFSCPISSNPSFTRISATTSQSSTSQTDMLLFPAGNSKHWVVRMDKPVVGVVTKAQIVDHYAQILTKVMGNEKDAQMWIYHVSWKNNFGFCCELDEDCANDLAGVPGVLSVQPDNNFESENKDYEGRNLENSLNMANSSEASQEVSVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPPRYNKSRARPSAS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04654 285 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 60 160 IPR037045 -
Trre2g04654 285 SUPERFAMILY RNA-binding domain, RBD 180 281 IPR035979 GO:0003676
Trre2g04654 285 SMART rrm1_1 193 266 IPR000504 GO:0003723
Trre2g04654 285 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 21 261 IPR039206 GO:0016554
Trre2g04654 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
Trre2g04654 285 FunFam Organelle RRM domain-containing protein 1, chloroplastic 160 285 - -
Trre2g04654 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 260 IPR000504 GO:0003723
Trre2g04654 285 Gene3D - 161 285 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04654 Trre-Chr2 54060176 54062763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04654 184 279 C2H2 Transcription Factor Family AT2G19380 31.250 1.91e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04654 - - mtr:11405373 487.648