Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04626 ATGATTTCATCTGGTATTAACTTGGTTATGACTATAATTGGTTTTGCTGTTAGCACAATGTTCATTGTTTTTGTATGCACGAGACTTATTTGTGCTCGAATTCACTTGAATGCTTCTAGAAGATCTTTTCTCATTGCTTCTAGATCCAATCTCAGCTTGATGGAAAGGGGTTGTCAAGGTATTGAACGCATTGATGTTGCTAAATTTCCAGTTAAGAAGTACAGTGACAAGTTTTTTGCTGCTGGAGAAAATTCACAATGCACAGTCTGTCTCTCAGAGTACCAAGGTGAAGATACACTGTGTATCCTTCCCCATTGTGGACACTCCTTCCATATGGCGTGCATAGACTTATGGCTGCAGCAGAATGCCACTTGTCCTGTTTGTCGAATATCATTGCGTGAATTTTCAGAGAAAACACGACCAATGCAACCTGTATATAGCTCCCATTATGGGATGGAGTCCTTTGACACACATCATTATCACTGTATAATGGCCGAAAATGGATTATCGACAAGAACCTCCGATAACCGTGGGATTAACCCTGTACAAGAGGATCACTTTCCATCTGAGGGTGGTGGAGCAGTTGAAATGGACAGTATCACCTCCTTAAGTCAGGGTGATTTCGTCAAAGATGAAGAGAAGAAGCATGTAGAGAGCCCATCAAATTTATAG 672 0.4092 MISSGINLVMTIIGFAVSTMFIVFVCTRLICARIHLNASRRSFLIASRSNLSLMERGCQGIERIDVAKFPVKKYSDKFFAAGENSQCTVCLSEYQGEDTLCILPHCGHSFHMACIDLWLQQNATCPVCRISLREFSEKTRPMQPVYSSHYGMESFDTHHYHCIMAENGLSTRTSDNRGINPVQEDHFPSEGGGAVEMDSITSLSQGDFVKDEEKKHVESPSNL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04626 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 135 IPR013083 -
Trre2g04626 223 CDD RING-H2_EL5-like 86 129 - -
Trre2g04626 223 SUPERFAMILY RING/U-box 81 135 - -
Trre2g04626 223 MobiDBLite consensus disorder prediction 173 223 - -
Trre2g04626 223 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Trre2g04626 223 MobiDBLite consensus disorder prediction 207 223 - -
Trre2g04626 223 Pfam Ring finger domain 86 129 IPR001841 -
Trre2g04626 223 PANTHER OS11G0150450 PROTEIN 1 183 - -
Trre2g04626 223 SMART ring_2 87 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04626 Trre-Chr2 53816314 53818081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04626 13 132 C3H Transcription Factor Family AT4G10150 37.097 8.06e-21 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04626 - - gmx:100794979 385.956