Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04624 ATGAATCATACTGACCCATATGGTTTACCGGAGGATCTCCGGCGATTAATATCATCATCAAGAAACACTAATAATACACATCTACCTACATCAGAGCCACCATGTTTATATGGCGGCGGCGGTGTTGGTGGTGGTGTTGTTGGTGTTACTTTTCCTCCACCAAATTATTGCTATGAACCTTCTCATCCTATCATGGTTGGTGATGTTTTCTACCCTCAAAGTCATAGTCATCATCATCATCATAACTATGGTTACTCTTCCACTATTAACCCTACTACAACTGCTAATTCAGATCATGCTACTGCTTCTGGTTCTGCAGCATTTTGTGTTGGTTTAGAAACTTCTTCTATAGATAATAATAAAGGATGGTTTGGTAATTTTGATTCTTGTAACAATAGATGGCCAAGACAAGAAACTCTTTCTCTTCTTGAAATCAGATCTCGTCTTGATTCTAAGTTCAGAGAGAATAATCAGAAAGCACCTTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAGGAAAAGTTTGAGAATTTGTACAAGTATTACAAGAAAACCAAGGAAGGTAAAGCTAGTAGACAAGATGGTAAACACTATAGATTCTTCAGGCAGCTTGAAGCAATATGTGGAGAAGCTTCAACCTCAGACAAAACTACACCTCATGCTGATCCTATTGTTGCTACTCAAACTCCAAATTTCACAATCAACCAAGAAAATATTAATGGTGTTATTGATCATAATCTGATCAATAACCTCAAGTACTCGGAGAGTCTAAGTTTCTCGAATTCATCTGAATTCGAGACATCTTCATCTGAAAACAACGACGAGGATCTCTCGGCCATTGCACACACGATGAAGTCATCGAAGCAGAAAGGGGTGGACAAAAGTGATAGGAGGGGGAGGAAAAGTTGGAGAGGTAAAGTAGAGGAGATTGTAGATTCTCACATGAAGAAGATTATAGAAACTCAAGATGCTTGGATGGAGAGAATGTTAAGTGTTGTTGAACAAAGAGAACAAGAGATGGCATTAAAAGAAGAAGAAAGGAAAAGAAAAGAGTCAATGAGGTTTGATAAAGAAATACATGAACTTTGGGCTAAAGAAAAAGCTTGGGTTGAAGCAAGAGATTGTGCATTGTTAGAAGTTGTAAGAAAACATATTGGAGTTGAAGCATCAAGTAAGAATAATGAAAGTAATAATACAAATTATGAATACCCTTTTGGAAATGTGGATCATGGATGGACAGAAATGGAGATATCAAGTTTGATACAACTAAGGACTAGTTTTGAACATCAAGTAAGAGAAAAAGGGTATTTGGATGATTGTGTTTGGGATGAAATAGGTGAAAAAATGGTGTATATGGGATTTAATAGGAATGGTGCTGAGTGCAAGAAAATATGGGATGAGATTAGTATGTCTCTTAGAAGGTCAGTGGATTGTGGAGTCAAATTTACAAGACCTTGGTGTTTGGGACTTAAGGTGACAGATGATGACGACCTTTGA 1533 0.3725 MNHTDPYGLPEDLRRLISSSRNTNNTHLPTSEPPCLYGGGGVGGGVVGVTFPPPNYCYEPSHPIMVGDVFYPQSHSHHHHHNYGYSSTINPTTTANSDHATASGSAAFCVGLETSSIDNNKGWFGNFDSCNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEASTSDKTTPHADPIVATQTPNFTINQENINGVIDHNLINNLKYSESLSFSNSSEFETSSSENNDEDLSAIAHTMKSSKQKGVDKSDRRGRKSWRGKVEEIVDSHMKKIIETQDAWMERMLSVVEQREQEMALKEEERKRKESMRFDKEIHELWAKEKAWVEARDCALLEVVRKHIGVEASSKNNESNNTNYEYPFGNVDHGWTEMEISSLIQLRTSFEHQVREKGYLDDCVWDEIGEKMVYMGFNRNGAECKKIWDEISMSLRRSVDCGVKFTRPWCLGLKVTDDDDL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04624 510 CDD GT1 132 198 - -
Trre2g04624 510 ProSiteProfiles Myb-like domain profile. 132 191 IPR001005 -
Trre2g04624 510 ProSiteProfiles Myb-like domain profile. 424 481 IPR001005 -
Trre2g04624 510 MobiDBLite consensus disorder prediction 294 317 - -
Trre2g04624 510 Gene3D - 424 486 - -
Trre2g04624 510 Gene3D - 134 196 - -
Trre2g04624 510 PANTHER FI21293P1 76 489 - -
Trre2g04624 510 MobiDBLite consensus disorder prediction 299 317 - -
Trre2g04624 510 Coils Coil 338 365 - -
Trre2g04624 510 FunFam trihelix transcription factor PTL-like 134 196 - -
Trre2g04624 510 Pfam Myb/SANT-like DNA-binding domain 132 219 IPR044822 -
Trre2g04624 510 Pfam Myb/SANT-like DNA-binding domain 423 487 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04624 Trre-Chr2 53799932 53802612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04624 133 496 Trihelix Transcription Factor Family AT5G03680 41.787 1.08e-87 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre2g04624 Myb_DNA-bind_4 4.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04624 - - gmx:100784522 563.148