Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04602 ATGTGCTTACCATTGAGACCCTTGACAAGGTATTTGTATATGAGTAAATTGGTTACACTTCCTGGAACATCAGGTGCACTTTTGCGGCTTGTAATTGATCAGTTGCAGAAGGTAACTCACGAAGGTTGTGTCAACCGGGTACGCTCCATGACACAAAATCCCCACATATGTGCATCTTGGGCAGAATATGATTATGTGCAGGCAGAGAAAATAGGATTGGAATATATGGATGTTGAAGCTTTGAAGAAGCTAAACAAAAATAAGAAACTGGTGAAGAAATTGGCAAAGAAGTACCATGCCTTTTTAGCTTCTGAAGCTGTTATCAAGCAGATTCCTTGTCTTTTGGGTCCTGGTCTCAACAAGGCAGTTGTTTCCCACCAAGAATCTCTTGAGGCTAAGGATAACGAAACTAAGGCAATGAGACCTGATTAA 432 0.4097 MCLPLRPLTRYLYMSKLVTLPGTSGALLRLVIDQLQKVTHEGCVNRVRSMTQNPHICASWAEYDYVQAEKIGLEYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPCLLGPGLNKAVVSHQESLEAKDNETKAMRPD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04602 143 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 46 141 - -
Trre2g04602 143 Gene3D - 53 140 IPR016095 -
Trre2g04602 143 SUPERFAMILY Ribosomal protein L1 52 122 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04602 Trre-Chr2 53513919 53517257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04602 56 139 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 74.157 6.52e-22 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04602 K02865 - oeu:111373161 106.301