LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g04591	ATGAATATATATTATAATAATTACGGGAAGAAGAGGAAAACTATCACTCTCGAGGTTGAGACCAGCGACACCATCGACAACGTAAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTGCTGATTATAACATACAAAAGGAATCAACCCTTCACTTGGTCCTAAGGCTCAGAGGAGGAACCATGATTAAAGTGAAGACTTTAACTGGAAAAGAGATTGAAATTGACATTGAGCCAACTGATACAATTGATCGTATCAAGGAACGTGTTGAAGAAAAAGAGGGAATTCCACCTGTGCAGCAGAGACTCATATATGCTGGTAAGCAGCTGGCTGATGATAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCTGTGCTTCACTTGGTGGTTGCATTGAGGGGTGGTAATTAA	468	0.4274	MNIYYNNYGKKRKTITLEVETSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVVALRGGN	155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g04591	155	CDD	Ubl_NEDD8	81	154	IPR038738	-
	Trre2g04591	155	Pfam	Ubiquitin family	81	152	IPR000626	GO:0005515
	Trre2g04591	155	Pfam	Ubiquitin family	12	76	IPR000626	GO:0005515
	Trre2g04591	155	ProSitePatterns	Ubiquitin domain signature.	29	54	IPR019954	-
	Trre2g04591	155	SUPERFAMILY	Ubiquitin-like	11	78	IPR029071	-
	Trre2g04591	155	ProSiteProfiles	Ubiquitin domain profile.	1	78	IPR000626	GO:0005515
	Trre2g04591	155	SMART	ubq_7	1	74	IPR000626	GO:0005515
	Trre2g04591	155	SMART	ubq_7	79	150	IPR000626	GO:0005515
	Trre2g04591	155	PRINTS	Ubiquitin signature	13	33	IPR019956	-
	Trre2g04591	155	PRINTS	Ubiquitin signature	34	54	IPR019956	-
	Trre2g04591	155	PRINTS	Ubiquitin signature	55	76	IPR019956	-
	Trre2g04591	155	PANTHER	UBIQUITIN	11	80	-	-
	Trre2g04591	155	FunFam	NEDD8 protein	80	155	-	-
	Trre2g04591	155	Gene3D	-	1	79	-	-
	Trre2g04591	155	Gene3D	-	80	155	-	-
	Trre2g04591	155	ProSiteProfiles	Ubiquitin domain profile.	79	154	IPR000626	GO:0005515
	Trre2g04591	155	FunFam	Ubiquitin-60S ribosomal protein	1	79	-	-
	Trre2g04591	155	SUPERFAMILY	Ubiquitin-like	81	154	IPR029071	-
	Trre2g04591	155	ProSitePatterns	Ubiquitin domain signature.	105	130	IPR019954	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g04591	Trre-Chr2	53360029	53364443	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g04591	13	78	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	98.485	5.04e-42	134

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g04591	K12158		-	zju:107403728	268.47