LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g04589	ATGTTGGAAATGGAAAAAGATTTTGATTCCAAGCTAAAGATTCAAAGGAGTTCTTCCTCTAACAATGGTGGTGCTGGTGCTGGGAATGTTCAGAGATCCAAAAGTTTTGCTTTTAGAGCTCCTCAGGAGAATTATACCATTCAAGACTTTGAATTGGGCAAGATCTATGGTGTTGGTTCTTATTCTAAGGTTGTGAGGGCAAGGAAGAAGGACACAGGAGTTGTGTATGCATTGAAGATCATGGACAAAAAATTTATCACCAAAGAGAATAAAACTGCTTATGTGAAGTTGGAACGCATAGTGCTTGATCAATTGGATCATCCTGGCATTGTGCGACTATATTTCACATTTCAAGACTCATTTTCTCTGTACATGGCACTTGAATCATGTGAAGGTGGAGAACTTTTTGATCAAATTACCAGGAAGGGTCGTTTACCTGAGGATGAAGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTTGAATACATACATGGTTTGGGAGTTATACATCGTGATATTAAGCCAGAGAACCTATTACTTACATCTGAAGGACACATTAAAATAGCTGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCCAAGTTACTGTCCTTCCGAATGCAGCATCAGATGACAAAGCCTGCACATTTGTGGGAACTGCTGCTTATGTCCCTCCAGAGGTTCTTAATTCCTCTCCCGCAACTTTTGGAAATGATCTCTGGGCACTTGGCTGCACATTATATCAAATGCTTTCTGGAACTTCCCCTTTTAAAGATGCAAGCGAATGGCTTATTTTCCAGAGAATTATAGCAAGAGAAATTCGATTTCCAGATTACTTTTCAGACGAAGCAAGAGACCTTATTGACAGGCTGTTGGATTTAGACCCCAGCAGGAGACCAGGTGCAGGACCTGATGGTTATGCTATTTTGAAAATACATCCATTTTTCAAGGGGGTTGACTGGAATAACTTAAGGGCACAAACTCCTCCAAAACTTGCTCTCGAACCCGGGACTCAATCGCCTGCTGATGAGTCATCATGGAGCCCTTCTCACATTGGCGACGGTTCTGCTAGACAGCCTGACGGTGCCACATCGTCTGCAGAGGGAACTGGTCACATAACCAGGCTAGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAATTTTTGGAGCCTGGCGAATCTGTTCTTATGATCTCCATGGTGAAGAAATTACAAAAACTATCAAGCAAGAAGGTGCAGCTCATCCTTACCAACAAACCAAAGTTGATCTATGTCGATCCTTCAAAATTAATTGTAAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAACATTCAAGTGACTAGTCCTTCAAATTTCAAGATTTGCACGCCTAAAAAGGTAATGTCGTTTGAGGATGCTAAGCAAAGAGCGTCGCAGTGGAAAAAGGCAATTGAAGGACTTCAAAACCGGTGA	1467	0.4124	MLEMEKDFDSKLKIQRSSSSNNGGAGAGNVQRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKVVRARKKDTGVVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDSFSLYMALESCEGGELFDQITRKGRLPEDEARFYAAEVVDALEYIHGLGVIHRDIKPENLLLTSEGHIKIADFGSVKPMQDSQVTVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPDYFSDEARDLIDRLLDLDPSRRPGAGPDGYAILKIHPFFKGVDWNNLRAQTPPKLALEPGTQSPADESSWSPSHIGDGSARQPDGATSSAEGTGHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLSSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVTSPSNFKICTPKKVMSFEDAKQRASQWKKAIEGLQNR	488

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g04589	488	Gene3D	-	365	488	IPR011993	-
	Trre2g04589	488	FunFam	3-phosphoinositide-dependent protein kinase 2-like	48	133	-	-
	Trre2g04589	488	MobiDBLite	consensus disorder prediction	331	370	-	-
	Trre2g04589	488	SUPERFAMILY	PH domain-like	311	487	-	-
	Trre2g04589	488	SMART	serkin_6	50	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g04589	488	Gene3D	Phosphorylase Kinase; domain 1	48	133	-	-
	Trre2g04589	488	FunFam	3-phosphoinositide-dependent protein kinase 2-like	134	332	-	-
	Trre2g04589	488	FunFam	3-phosphoinositide-dependent protein kinase 1	358	488	-	-
	Trre2g04589	488	MobiDBLite	consensus disorder prediction	340	370	-	-
	Trre2g04589	488	Pfam	Protein kinase domain	52	303	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g04589	488	Pfam	PH domain	385	487	IPR033931	-
	Trre2g04589	488	SUPERFAMILY	Protein kinase-like (PK-like)	47	348	IPR011009	-
	Trre2g04589	488	Gene3D	Transferase(Phosphotransferase) domain 1	134	330	-	-
	Trre2g04589	488	CDD	STKc_PDK1	48	317	IPR039046	GO:0004674
	Trre2g04589	488	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	169	181	IPR008271	GO:0004672\|GO:0006468
	Trre2g04589	488	ProSiteProfiles	Protein kinase domain profile.	50	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g04589	488	PANTHER	SERINE/THREONINE-PROTEIN KINASE	31	336	-	-
	Trre2g04589	488	Coils	Coil	468	488	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g04589	Trre-Chr2	53261847	53268627	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g04589	1	488	AGC Kinase Gene Family	AT3G10540	81.670	0.0	833

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_PDK1	Trre2g04589		Pkinase	1.7e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g04589	K06276		-	gmx:100788780	884.404