Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04578 ATGGCATTACAGTCTTTGTCTATGGTGATCTTACTGGCATATGGTGCACTGATAACTCTTGTCTCATTGACACCATGCTGGTATGTCATGGTCACACATATCGAGAAACGTGTGAATTTGAACTCAAAAAATATTGTAGCTCAATTGCAATCAGAAATTCAGTACTCAGCTGAACTGTTGCATCCAATGAAATCCTCATCAACAAATTTAGCAAGATTGTTGAGTTCATCACTTGATTCTAATAACATCTCTTTCTCTGATATTGAAACCAAGGTTGCTCCATTACTATTTCAAGCATTTGAGACAGTTCCTCACTTAAGTCAAATCTCATACATAGGAATGGAAGGTCTCTTTTTCTCATACTGCAGTGATCGTGATCAAGCTCTAGCGATGTTCTCTAATTCATCATCGAATAAACCCTTATACTATGTTCAGCATGTGAATAATGAAACCGGAGAGGTTTTTGGAGAAGCCGTAATATCAAACTCCTCTATCGACACGAGTTGGATTAAGGAAGTAGCTAATCTTTCAAATGAATTTGCGTCGTTAGGAACCAAATGGAGCAATGGCCACGATCTTTTGTTCCTTAATTCTGCTAGAATCAACAGAACAGGAGTGATTTCGCTAGGATTTACAGCAAAGTCATTAACCGATTATGTTACTAGTGTTGACCGTTTAGGCACAAGCTCGTATTTAGCTACCAAAGATGGACAAATTCTTGTGGAAGGGATTCAACATATCCGTTTCGTTGTTTTTAACGATTCAGTTTCCTTCCAATCAGTGAATGCAAATGGAGATGTGATAAAGAATGACGGTACTGTTTCATGCAAGAATGAAGCTATTGCTTCTAATTTGAATATTCAAGATAACAAATATCTTATTCACTGCTACCTCATTGATATAATGGGAATAGAATCAGTGTATATTTTGGCTGTACCAAGAAATGGATTTGATGTGAGTTATAAGAAAATGGGATTGGCTCTATTGAATGTAATGATGGTAATGATACTTGTTGCTGTCTTTAGTTTTCTATTTATAGATGGTAGAGCCATAAGAAGAGAAATGCACTTGTGTGCATCACTCATCAAACAAAAAGAGGCCACACAACAAGCCGAGAAAAAAAACATGAACAAGAGCCTAGCAGTTGCTAGTGCCAGCCACGACGTTCGCACTTCTCTCGCAGGCATTACTGCTCTCATAAAAATTTCGTCTAACTTAGTTCCCTCTGGTTCAGAATTGGCATCAAATTTAATCCAAATGGAGGATTGTACGCAAGATTTACTAGGACTATTGAACTCTATACTTGACACAAGCAAAATTGAGGTAGGAAAAATGGAACTGAAGGAAGAAGAATTTGATTTATCTCATTTTTTGGAAGAAGTGGTTGATATATACTATCTTGTGGCCATGGAGAAAGGTGTAGAACTTGTATTAGACCCTTGTAATGGTTCTATTATAAAATATTCACATGTGAAAGGCGATAGAGGAAGACTTAAACAAGTTTTGTGTAATTTACTCAACAATGCTATCAAATTTACAAATGAAGGTCACATAACAGTTCGAGCTTGGGCGCAGAAGCCGACATTAAGTAGTTCAATAATCAAGAGTAACCAACATAGTTTCATGAAACATTTTTCACACTTATTTTTGAAGAAGAAAAATGAAGCAGATGAGGAGGACATAGAGAAAACCATGAATTCAATTCAACAAGATCCTCCTCCGCGTTATATGGATTTCGTGTTTGAAGTGGATGATACAGGAAAAGGAATTCCGAAAGAGAATTACAAGTCTGTGTTTGAGAATTATGTTCAAGTTAAAGAAACTGATCCTGTCCAAGAAGGAACTGGCTTAGGACTTGGAATTGTACAGTCTTTGGTACGTTTGATGCATGGAGATATTGAAATTGTGGACAAGAATATTGGTGAAAAAGGAACATGTTTCAGGTTCAATGTTCAACTCAGTTTATGTGAAGGAGAAACAGTGACAGATTTTAGTGCAAGGGGAGGTCTTGACTATGGAACAAGTAGCAGGAATCAATCTCAAGGGAGAACCATTCATGCTACTAATTCTAATTCAAACATTTGTTCTATGAGTCCTATGTTACATATTTGCAACTCTAGTCCTAGGCTCGAGGCTTCGCGTGTTGTTCTTTTCATCGGAAACAAGGAGCGCCGGAGGACTTGTAAAAGGTTCATGAAGAGCTTAGGGATTAAAGTTAAGGTTGTGAATTGTCAAGAAGATTTGTTTGATACTCTAGAGGAGATCAAACAAAAGGGTCGTCGTTCCGGTGGCCCTAGTTCTCCAGAATCTTCTTCCAATATGAGTCCTTCCGATTCCACATCTCATAATTCTTTTCCAAGAACCAGAGGTGTTCCTTTGAGTTCTATGGATGGAAATGAGTATACATCTCCGGTGTTCAAGAAGACGAATGTTGGAACTGTCCCGGGATTTGTCTTGATTGTCGTAGATGCAAATGCAGGACCATCATTTCCTAAACTTTTCGGAATTGTATCCGACTTCAAGAAAGGCTTTTCTAGCCATTGTAACATTGTTTGGTTGGATAATCCACATTTCCATCGTATCGATTCCAAAATAATTGATCAAAATGACATTGTCATATTGAAGCCGTTTCATGGTAGTCGTTTGTTCCAAGTCATAATGCTTCTTCCTGAGTATAGTAACGGTAGTGCTTGGCAAAGCATTAAGAAACCGCGTGTTAGAAAATCTCCGGTTCGTCGAGGAGAAATACAAGAATGTGGAGAGTCAAGCTGTTACAACAATTCCTTGCATTGCAAGAAATTTTTGGTTGTTGATGATACTAAAATTTTGCGTATGTTAGCTACAAATATATTGGTTTCGCTCGGTGCAACAGTTGAGCAATGTGAGAATGGAGAAGAGGCTGTGAGGCTAGTTGATGAAGGTCTAAAAAGGGATTATCCTAATCTTCCTTATGATTACATCTTAATGGACTGTCAGATGCCGGTGATGAATGGATTCGAGGCAACAAGGCAGATACGAGAGATGGAGAAGTTGTACGGTGTTCACATTCCTATCATTGCGTTAACCGCAGATGTTGATAGTTCGACGGCAGTGACTGGAATGGACTTTCATATAGAGAAGCCTCTTAGAAAAGAGCATTTACTTGAAGCTGTTAGATACTTCAACACTAAAGAGTATATGCATGCAAATTCATTCAGAAATGAGTAA 3207 0.3801 MALQSLSMVILLAYGALITLVSLTPCWYVMVTHIEKRVNLNSKNIVAQLQSEIQYSAELLHPMKSSSTNLARLLSSSLDSNNISFSDIETKVAPLLFQAFETVPHLSQISYIGMEGLFFSYCSDRDQALAMFSNSSSNKPLYYVQHVNNETGEVFGEAVISNSSIDTSWIKEVANLSNEFASLGTKWSNGHDLLFLNSARINRTGVISLGFTAKSLTDYVTSVDRLGTSSYLATKDGQILVEGIQHIRFVVFNDSVSFQSVNANGDVIKNDGTVSCKNEAIASNLNIQDNKYLIHCYLIDIMGIESVYILAVPRNGFDVSYKKMGLALLNVMMVMILVAVFSFLFIDGRAIRREMHLCASLIKQKEATQQAEKKNMNKSLAVASASHDVRTSLAGITALIKISSNLVPSGSELASNLIQMEDCTQDLLGLLNSILDTSKIEVGKMELKEEEFDLSHFLEEVVDIYYLVAMEKGVELVLDPCNGSIIKYSHVKGDRGRLKQVLCNLLNNAIKFTNEGHITVRAWAQKPTLSSSIIKSNQHSFMKHFSHLFLKKKNEADEEDIEKTMNSIQQDPPPRYMDFVFEVDDTGKGIPKENYKSVFENYVQVKETDPVQEGTGLGLGIVQSLVRLMHGDIEIVDKNIGEKGTCFRFNVQLSLCEGETVTDFSARGGLDYGTSSRNQSQGRTIHATNSNSNICSMSPMLHICNSSPRLEASRVVLFIGNKERRRTCKRFMKSLGIKVKVVNCQEDLFDTLEEIKQKGRRSGGPSSPESSSNMSPSDSTSHNSFPRTRGVPLSSMDGNEYTSPVFKKTNVGTVPGFVLIVVDANAGPSFPKLFGIVSDFKKGFSSHCNIVWLDNPHFHRIDSKIIDQNDIVILKPFHGSRLFQVIMLLPEYSNGSAWQSIKKPRVRKSPVRRGEIQECGESSCYNNSLHCKKFLVVDDTKILRMLATNILVSLGATVEQCENGEEAVRLVDEGLKRDYPNLPYDYILMDCQMPVMNGFEATRQIREMEKLYGVHIPIIALTADVDSSTAVTGMDFHIEKPLRKEHLLEAVRYFNTKEYMHANSFRNE 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04578 1068 Gene3D - 348 441 - -
Trre2g04578 1068 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 653 IPR003594 -
Trre2g04578 1068 MobiDBLite consensus disorder prediction 763 795 - -
Trre2g04578 1068 Gene3D - 442 658 IPR036890 -
Trre2g04578 1068 SMART REC_2 932 1051 IPR001789 GO:0000160
Trre2g04578 1068 PRINTS Bacterial sensor protein C-terminal signature 579 593 IPR004358 GO:0016310|GO:0016772
Trre2g04578 1068 PRINTS Bacterial sensor protein C-terminal signature 613 631 IPR004358 GO:0016310|GO:0016772
Trre2g04578 1068 PRINTS Bacterial sensor protein C-terminal signature 597 607 IPR004358 GO:0016310|GO:0016772
Trre2g04578 1068 CDD REC_hyHK_CKI1_RcsC-like 934 1051 - -
Trre2g04578 1068 SMART HKATPase_4 493 655 IPR003594 -
Trre2g04578 1068 ProSiteProfiles Response regulatory domain profile. 933 1055 IPR001789 GO:0000160
Trre2g04578 1068 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 365 445 IPR036097 GO:0000155|GO:0007165
Trre2g04578 1068 SUPERFAMILY CheY-like 933 1056 IPR011006 -
Trre2g04578 1068 Gene3D - 917 1061 - -
Trre2g04578 1068 CDD HisKA 375 439 IPR003661 GO:0000155|GO:0007165
Trre2g04578 1068 ProSiteProfiles Histidine kinase domain profile. 384 655 IPR005467 -
Trre2g04578 1068 PANTHER TWO-COMPONENT HISTIDINE KINASE 63 1052 - -
Trre2g04578 1068 Pfam Response regulator receiver domain 935 1051 IPR001789 GO:0000160
Trre2g04578 1068 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 432 651 IPR036890 -
Trre2g04578 1068 SMART HisKA_10 377 443 IPR003661 GO:0000155|GO:0007165
Trre2g04578 1068 MobiDBLite consensus disorder prediction 755 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04578 Trre-Chr2 53141856 53146283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04578 11 1059 Histidine Kinase Gene Family AT2G47430 38.287 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre2g04578 HATPase_c 2.4e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04578 - - cam:101504256 1598.18