Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04571 ATGACAGATTTTCAGCCTCTACAGCAGAAGCCTGAATCTGGTGATACCACCCATGCTGAGTTTGACCATGGATTGGAGGACTTTATGCGTGGTCATTTGGATGATTGTATGTCATTTGCTTCATGTAGTTCTTCCCGAGCACAGGATGATGAGGACGATGAGAGTGATCAGCTAGTTCGGAGGAGACGGAGGTCTGATCTTGAAGGGGATGATTTAGCGGAGTCATCAGCAGCGCGTAGGCGCCATTCGCGAATTTTGAGCAGATGGGCTGCCAGACAGGCGCAGGAGATGATAACTACTATTGAAAGGAGGAATCGAGAGTCAGAATTGATGGCGCTTGCAGGGTTACATACGGTGTCCATGTTGGACTCCTCTTTTTTGAGGGGTTCACAGTCTCCTACTTCTGGCCAGGAGGGGGCTGTGGAGAGACCGAGCACTCAGGCATCTTCCATTCTGCAGATGTGGCGTGAATTGGAGGATGAACATTTGTTGAATCGGGCACGTGAAAGGATGAGGGAAAGGTTGAGGCGGCAGAGAAGTTCTTCTGATGCTAATACCAATGTGTCAAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCGAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACCTGGTCACATGATCAGATTGGATCACGTAATGCACATGTGAATAATAATGGATCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGCCAAAGAAATAACAACCACAGATCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTGAGAATTGTCAGGGAGTGGGTGCAAATGACTAGCCAACAAAGAGGTTCACGTGGGAGCCGTAGGGATGCTCAAGTAAGTGAATCTGCTCAAGCTGATCAGACCCGTGGTATGGCAGCTGACCATGATGAGCGTCAGCCGGAACATGTTCGGCGGGACATGTTGAGGCTGCGCGGAAGACAGGCTCTAGTTGATTTGCTTGTTAGGGTAGAAAGGGAAAGACAAAGAGAGCTGCAGGGTTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAATCGTATTCAGTCATTGCTCAGAGGTAGATTCCTCCGAAATGAAACTGTTGAAGATGAGAGGCCTCCTTCTACAGCTGCAAGTGAATTAGTTCAATTAAGACAACGACACACAGTCTCCGGTATAAGGGAGGGGTTTCGCTCAAGATTAGAAACTATTGTTCGTGGTCAAGCAGGCACCAATCCTGATGCCACATCAAATAGTAGCATTGATGAAACAAGACAAGATGAGAGCCAATCAAACACTCTTATAGATGACCAACAAGAAAATTATGACCAAGAGCAGATTAGGAACCCGGAAGCTGATGCACGTCAGTTGCCTAATCAAACAGGAACTTTGGAGAGTAGCACAAGTGAGACTATTACTTGGCAAGAAGCTAGTAATCAAGGAGGGGATTGGCAAGAACAGATTGCTGCAAATGGGGAAGGAAACTGGCCGCAGAGAGTTAATGGTCCATTCAATCAGCTCAGAGATGGAATGGAAGCCAGTGATTGGCCACAGGAAACTCCCAGAAATTCAGCTGGGGAAGATCCTGATCCACAGGAGGCTCAAAGAATTTGGCAGGGCGATAACACAAGGGAAGCTGATGGTAATTGGTCTGAAGGACCTTCTGCAGCTTCAAGGAATCGCCGTGGTGTTCCGTTTAGAAGATTCAATAGATTTCATCCTCCTGATGATGATAATGTGTACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTATCTAACCTTCTACGCAGTGGTTTCCGTGAAAGTCTGGATCAACTAATTCAGTCATATGTTGAAAGGCAAGGTCATGCACCAATTGACTGGGATTTGCATCGAAACTTGCCTACAACTACTCCTGCCTCACCTGAACGAGACCCTGATCAGCAGGGTGATGAACATAATGAGGGTCAGCGTGAAGCCATCAACAGACCTTCACTGGTGTTGCCTTCTCCACCAGTGCCCCCGCCACAACCACTGTGGCATCAAGATTTGCACCAAACTGGATGGTCTCGTCATACCATGCACCGCTCCGAAATTGAATGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAACCACATGCAGAGGATGTTGGAAGCCTGCATGGATATGCAACTGGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCTCTGAACCGCTCAGCTGGTGAAAATGGATTGGGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTAAACAAAGGAACTTGCTGTGTTTGTTGTGATAACCACATTGATTCACTTTTGTACAGATGTGGACACATGTGCACATGTTCAAAATGTGCTAATGAGTTAATTCGTGGAGGAGGTAAGTGTCCCTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAG 2562 0.4707 MTDFQPLQQKPESGDTTHAEFDHGLEDFMRGHLDDCMSFASCSSSRAQDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASSILQMWRELEDEHLLNRARERMRERLRRQRSSSDANTNVSSTMSDSRGSENRGSLGDASESENDYGTWSHDQIGSRNAHVNNNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNHRSEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQVSESAQADQTRGMAADHDERQPEHVRRDMLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHTVSGIREGFRSRLETIVRGQAGTNPDATSNSSIDETRQDESQSNTLIDDQQENYDQEQIRNPEADARQLPNQTGTLESSTSETITWQEASNQGGDWQEQIAANGEGNWPQRVNGPFNQLRDGMEASDWPQETPRNSAGEDPDPQEAQRIWQGDNTREADGNWSEGPSAASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGHAPIDWDLHRNLPTTTPASPERDPDQQGDEHNEGQREAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSKWGHVNKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04571 853 MobiDBLite consensus disorder prediction 53 79 - -
Trre2g04571 853 MobiDBLite consensus disorder prediction 566 586 - -
Trre2g04571 853 ProSiteProfiles Zinc finger RING-type profile. 801 840 IPR001841 -
Trre2g04571 853 MobiDBLite consensus disorder prediction 521 592 - -
Trre2g04571 853 MobiDBLite consensus disorder prediction 483 501 - -
Trre2g04571 853 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 111 853 - -
Trre2g04571 853 MobiDBLite consensus disorder prediction 172 246 - -
Trre2g04571 853 SUPERFAMILY RING/U-box 800 846 - -
Trre2g04571 853 MobiDBLite consensus disorder prediction 126 148 - -
Trre2g04571 853 MobiDBLite consensus disorder prediction 299 322 - -
Trre2g04571 853 MobiDBLite consensus disorder prediction 41 79 - -
Trre2g04571 853 MobiDBLite consensus disorder prediction 181 239 - -
Trre2g04571 853 MobiDBLite consensus disorder prediction 434 501 - -
Trre2g04571 853 Pfam Zinc finger, C3HC4 type (RING finger) 798 845 - -
Trre2g04571 853 CDD mRING-HC-C3HC5_NEU1 798 850 - -
Trre2g04571 853 MobiDBLite consensus disorder prediction 654 702 - -
Trre2g04571 853 MobiDBLite consensus disorder prediction 671 685 - -
Trre2g04571 853 MobiDBLite consensus disorder prediction 299 336 - -
Trre2g04571 853 MobiDBLite consensus disorder prediction 435 470 - -
Trre2g04571 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 851 IPR013083 -
Trre2g04571 853 MobiDBLite consensus disorder prediction 1 23 - -
Trre2g04571 853 Coils Coil 730 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04571 Trre-Chr2 53036266 53041704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04571 783 847 C3H Transcription Factor Family AT3G06140 37.879 1.27e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04571 - - gmx:100784174 1401.73