Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04566 ATGCCTAGACGAAAGGTAAAACTTGCTTTTATCTCTGAAGAGTTGGCAAGGAAGGTAACCTACAACAAAAGAAAGAAGGGTCTCATTAAGAAGGTGACAGAACTCACAACTCTTTGTGATGTTCCTGCTTGTGCCATAATTGCCAGTTCTTTTGATTCTGAAACAGAGGTCTGGCCAAATCGAGAGGGAGCCATGAAGGTGATTGAGAGGTATCATCATTCATATATGCTAGACGAAAAGAGGAATGTGAATCAAGAGAGATTCATCATGCAGATGATTACCAAAGGAAGGGACCAGGTAAGAAAGATGAAACACGACAATCGTGAGAAGGAGCTTAATCTTCTTATGTTCATTTGCTTGCAAAACAATAATATCGCTATTGACCTGAATGCTGAAGAACTGAAAGATTTTGATAAGCTTGTTGAGAAGAAGTTGAAGGAGGTTGGTAGTAAGATTGAGACACTTGATTGA 471 0.3928 MPRRKVKLAFISEELARKVTYNKRKKGLIKKVTELTTLCDVPACAIIASSFDSETEVWPNREGAMKVIERYHHSYMLDEKRNVNQERFIMQMITKGRDQVRKMKHDNREKELNLLMFICLQNNNIAIDLNAEELKDFDKLVEKKLKEVGSKIETLD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04566 156 Gene3D - 14 111 IPR036879 GO:0003677|GO:0046983
Trre2g04566 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre2g04566 156 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre2g04566 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre2g04566 156 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Trre2g04566 156 CDD MADS_SRF_like 3 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre2g04566 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre2g04566 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Trre2g04566 156 PANTHER MADS BOX PROTEIN 3 152 - -
Trre2g04566 156 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04566 Trre-Chr2 53008058 53008528 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04566 3 155 Type I MADS-box Gene Family AT1G65300 40.260 4.25e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre2g04566 SRF-TF 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04566 - - tpra:123888139 189.889