Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04550 ATGTCAGGAGAGGAAATTTGGCCACCCATAGAAGAAGAATCTAACACATCTATGCCTCCATTTGATAACAGTAGTGGCTACAATTCAAGAACAGGAATTTATCACTCCCTTGTTAAGCTTGAAACCAAGCATGAAATCCCAACAAAGCCAGATCTTAACACTGCAAGTCTTGTGCTATCACAGTTCCCAACAGGAGAACTGGCTGATGCAAGAATTGCATACATTGATTTAAGTACTAATCACAGTGTAACCTACGGCGAGATTCACCGATCGGCTTACTCCCTTGCAACAGCTTTGTTTCATGGACTTGAGATTAGAAAAGGCGACGTGGTGTTTTTGTTGTCTCCAAACTCGGTTTTGTACTCAACCATATGCTTAGCTGTGTTATCAGTTGGTGCAATTCTTACCACTGCTAACCCTCTCAATACTAAGTCGGAAATCGCGAAACAAGTACAAGATTCAGGTGCTAAACTAGCCATCTCAGCACCAGAAGAGTTACACAAATTGGTTCCAACTGGAGTTCCTACAATTCTCACCTCCAGTTCATCCGATGGAAAGTTTTTATCAGTTGAAGAGTTAATAGAAGGCTGCTACGATTCACAAGAGTTACCGCATGTTCCTGTGGAACAATCAGACACTGCTGCTATACTTTACTCTTCAGGTACTACAGGAGTAAGCAAAGGTGTTGTTTTGACACATGCAAATCTCATAACCATAATGAAACTACTCTGCTGGTCTGCCGATGTATCTGCAGCTCAAGACGATGTTTTCCTAGCCTTCATTCCAATGTTTCATATCTATGGACTGATGTTCTTTGGATTAGGGCTGTTGTGTGTTGGTGTTACGACAGTTTTGATGCAGAAATACGATTTCCAATCTATGCTTGTCGCTATCGAGAAGCACAAAGTTAATAACATACCAGCAGTGCCACCAGTGATCCATTCGTTGGTGAAACACGCAAGCGAAAATCGGTGTGACTTGTCTAGCCTAAGAAGAGTTGGCTCAGGTGCTGCACCTTTGAGTAAGGAAATGTCACGGGAGTTCAGAAAGATGTTTCCTTCGGTTGAACTAAGGTCGGGTTATGGACTAACAGAAAGTTGTGGGGGTGCAACATTTTTCGGGTCGGATAAAGATGCTCAAGCTCATCCAGAAGCATGTGGAAAGCTGATTCCAACTTTTTGTGCAAAAGTGATAGATATTGAAACAGGGAAGCCTTTGCCTCCTCACAAGGAAGGAGAGTTATGGCTGAAAAGTGCTACTATTATGAAAGAATATCTAGGAAATGTGGAGGCAACAACTGCAACAATTGATTCAGATGGTTGGTTGAAGACAGGAGATCTTTGTTATATTGACGATAATGGAATTGTCTACATAGTTGAACGAATAAAGGAACTAATCAAGCACAATGGGTATCAGGTAGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGCCATCCCCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACCGGACAGATACCAATGGCGTATGTGGTGCAAGCGTCTGGTTCTGAACTCTCAGAAGACCAGGTCATTAAATTTGTTGCAGGCCAGGTGGCTCCCTATAAAAAAGTGAGAAGGGTGAGTTTCATTGACAGTATTCCAAGGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTATTGCTCGAAGCAAATATCAACTTGTCTCTAAGTTATGA 1713 0.4238 MSGEEIWPPIEEESNTSMPPFDNSSGYNSRTGIYHSLVKLETKHEIPTKPDLNTASLVLSQFPTGELADARIAYIDLSTNHSVTYGEIHRSAYSLATALFHGLEIRKGDVVFLLSPNSVLYSTICLAVLSVGAILTTANPLNTKSEIAKQVQDSGAKLAISAPEELHKLVPTGVPTILTSSSSDGKFLSVEELIEGCYDSQELPHVPVEQSDTAAILYSSGTTGVSKGVVLTHANLITIMKLLCWSADVSAAQDDVFLAFIPMFHIYGLMFFGLGLLCVGVTTVLMQKYDFQSMLVAIEKHKVNNIPAVPPVIHSLVKHASENRCDLSSLRRVGSGAAPLSKEMSREFRKMFPSVELRSGYGLTESCGGATFFGSDKDAQAHPEACGKLIPTFCAKVIDIETGKPLPPHKEGELWLKSATIMKEYLGNVEATTATIDSDGWLKTGDLCYIDDNGIVYIVERIKELIKHNGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVQASGSELSEDQVIKFVAGQVAPYKKVRRVSFIDSIPRSAAGKILRKDLIARSKYQLVSKL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04550 570 CDD 4CL 46 558 - -
Trre2g04550 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Trre2g04550 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Trre2g04550 570 MobiDBLite consensus disorder prediction 1 26 - -
Trre2g04550 570 SUPERFAMILY Acetyl-CoA synthetase-like 69 561 - -
Trre2g04550 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 559 - -
Trre2g04550 570 Gene3D - 42 463 IPR042099 -
Trre2g04550 570 FunFam 4-coumarate--CoA ligase 2 464 564 - -
Trre2g04550 570 Pfam AMP-binding enzyme 71 467 IPR000873 -
Trre2g04550 570 Gene3D - 464 566 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04550 Trre-Chr2 52894579 52896845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04550 22 566 Monolignol Biosynthesis Gene Families AT1G20500 41.516 9.36e-148 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04550 K10526 - gmx:100783104 917.916