Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04547 ATGGCTATCTACCAAGGTCCTGGATTCCGATTCCACCCTACCGACGAAGAAATCGTTTGTTTCTACTTGAAACGGAAACTCACCGGAAATTTACCTTCTTGCTTCGATCATCTCGCTGTTATCGATATCTACAAGTTCGAGCCGTGGGATCTTCCAAGTTTGTCGAAGTTGAAAACTAGGGATTTGGAATGGTACTTTTTTACTGGGCTGGACAAGAAGTATGGTAATAGTATCAGGACGAATCGTGCTACTGATAGAGGTTACTGGAAAACTACTGGCAAGGATCGTGTTATTAAGAACGGGGATGTTACTGTTGGAATGAAGAAGACTCTTGTTTATCACTTGGGTAGGGCTCCTCATGGTGACAGGTCAAATTGGGTTATGCATGAATATAGGATGATTGATGAATCATTGGCCAAAGCTGGAGTGCAGGATGCATATGTTCTGTGTAGGATATTCGAGAAGAGTGGTTCGGGGCCGAAGAATGGGGAGAAATATGGGGCACCCTTTGTTGAAGCGGAATGGGAGAATGTTGTTGAAGGACAGGCGCTTCCTTTGCCGCCTGTTAATAATGAGGTATTGAAACAAGAAGTGTCTGCTCATGCTCCTGATGTCAATGAATGGGTGAATTCTTTGGTGGCTGTTGATAATGAGCCTTTTAAACAAATGCCTGCTCCTGCTGATGATGATTATGTTGAAACCCTTGACCTTGATCAGGAACTCGATACTAGTGTCACAGTTGGAAGTGCTGATCTTCCATTGAACTACTGTTATGGGGAGTCTAGTAGCCATCCTCAGTATTCCCAAGCATTTATTAATGATCATAAGCAATTGGAAGCTGCTGTTGGTATTTATGATAATCAGGTTGATGAGCCTGATAATATGGCTCATCTATATGGTGTGGATATCAATTCAGTGCAAGATGGATACAATGGTGAGACAAACCATAACGAGAATCCTCTGAATTTCAATTTTGCATCCGAGGATCCAGATCTATATTTTGATGCCTCTGCTTATCTCACGGGCTTGGGTGAAGAATACCTTGAAACCAATGATATTAAGAATCTTGACGAGGCTGTTCCCTCCGAGTTTGATCCTTCTGTTGCAGCAATGGTAGATGAGTACCTTGCATGCCCTGATGAAGATATTTCCAATTATATATGCTTTGATTCTCCTGTGAATGCAGGGAGTGAAAGCCCCATTGCCAACTACGGACAACCTTTCATTGATCAGAATCTGGAGGGTGAAACCAATGGTAGTTCCTTGGCTAACAAACATGTTTTTGAAGCACAGTCTAGTATTGAAGTTTTACCAAAGGACAATCTAGAGGCATCAAATTGGGTCTCAGATGATGCAAATTATTTTGTGAAGCAAGCCAATAAATTTTTGGCCCACATACCAGCTCCACCTGCATTTGCTTCAGAGTTTCCTGCTAAGAAGTTTGCTATTGGGATGCATCCTGGAGCAGAGTCTTCCAGTTCAGCTCATATAGCTGCAGGTATGATCAGCATAACAGACATTACTTTTAGAGGCAACACAATGGATTGGATGGTGGGCAAGAATGGAGGTTTTAGCACCGTAATGTCTACTGGGTTTTCCCAAACTGATGTTAACTCTCCTACCATGGTGCCTCTTTCTGGCTTGATCTGTAGCAAAACTGCACTTATGTTATCACATGGTTGGGTTTTCTTGACGGGTTTCTCAGTTGTGATTCTTTCACTGAGTTTCAAGATTGGATGCTTCATGTATACGGGTAAATGA 1761 0.4236 MAIYQGPGFRFHPTDEEIVCFYLKRKLTGNLPSCFDHLAVIDIYKFEPWDLPSLSKLKTRDLEWYFFTGLDKKYGNSIRTNRATDRGYWKTTGKDRVIKNGDVTVGMKKTLVYHLGRAPHGDRSNWVMHEYRMIDESLAKAGVQDAYVLCRIFEKSGSGPKNGEKYGAPFVEAEWENVVEGQALPLPPVNNEVLKQEVSAHAPDVNEWVNSLVAVDNEPFKQMPAPADDDYVETLDLDQELDTSVTVGSADLPLNYCYGESSSHPQYSQAFINDHKQLEAAVGIYDNQVDEPDNMAHLYGVDINSVQDGYNGETNHNENPLNFNFASEDPDLYFDASAYLTGLGEEYLETNDIKNLDEAVPSEFDPSVAAMVDEYLACPDEDISNYICFDSPVNAGSESPIANYGQPFIDQNLEGETNGSSLANKHVFEAQSSIEVLPKDNLEASNWVSDDANYFVKQANKFLAHIPAPPAFASEFPAKKFAIGMHPGAESSSSAHIAAGMISITDITFRGNTMDWMVGKNGGFSTVMSTGFSQTDVNSPTMVPLSGLICSKTALMLSHGWVFLTGFSVVILSLSFKIGCFMYTGK 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04547 586 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Trre2g04547 586 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Trre2g04547 586 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 242 - -
Trre2g04547 586 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Trre2g04547 586 SUPERFAMILY NAC domain 5 155 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04547 Trre-Chr2 52880431 52883022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04547 6 176 NAC Transcription Factor Family AT5G04410 72.674 3.59e-85 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre2g04547 NAM 5.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04547 - - mtr:25484826 852.432