Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04545 ATGGGTCGCGAACCTCTCTTACTTCCACCCCCAACCACACCCATACCCCCATCTACCACCACTGTCAGTAACCTTCCACTCGCTGTTTCTGCACCATCTGCTTCTGCTACTGCTGCTCCACCTACCTCTCTTGCTCCTGGCTTTAGGTTTCACCCAACTGATGAAGAACTCGTTATTTATTACCTCAAGCGCAAGGTTTCTGGAAAACCCTTTCGATTTGATGCTATTGCTGAAGTTGACATCTACAAGAGCGAACCCTGGGACCTTTCAGATAAGTCAAGGTTGAAGACCAGGGACCAAGAGTGGTATTTTTTCAGTGCATTGGACAAGAAGTATGGAAATGGTGGCAGAATGAACAGGGCTACTCTTAAAGGGTACTGGAAAGCTACTGGAAATGATCGTCCCGTTAAGCATGATTTAAGGACTGTAGGGTTGAAGAAAACTTTGGTGTTTCATAGTGGCCGAGCTCCTGATGGTAAGAGAACTAACTGGGTTATGCATGAGTACAGGCTTGTTGAAGAAGAAATGGAGAGGGTTGGGAATGGATCCTCTCAGCCACAGGATGCATATGTCTTGTGTAGAGTATTTCACAAAAATAACATTGGACCTCCAAATGGACAACGATATGCACCTTTTGTTGAAGAAGAGTGGGAAGATGGTTCGGGAATGGTTCCTGGAGCAGAGCTCGTGTGTAATGGTCCTCTTGACCGCCCTCTGCGTATTGAATACAACAACGGTGGTCCTTCATGCAGTGAAGGAAGAAAAAATGTTGTGCAGGACACTCAATCCAACAATAAAACTCCACTTGATGTGAACAAGCTACCGATTGAGACCCAAAATCTTCTTGCTGTGTGCAAGAGGGAGAGCATGACTGAGTTTTCATCACCAGAAAAGGATGATTCTAAGCGTATGCATGTGGATGACGAGTACCCATCACCCCAAACTGATAACCCAAAGCCCTTACCCTTACCTCAAATATACAAAAGGCGGCGATATAACTTGAACTCCAATCACACTAATGTTTCCGGAGATTCATTCCCTAACAGTCAGGATCCATGCTCATCTACAATAACCACTGCGGCGACAACAGTCCCGGCAACTGCTGCCCCTGCCAAAACTACCAACCCTGCACCGAAGAAACATTTTCTGTCTGCACTGGTGGAGTTTTCTCTGCTAGAATCACTTGAATCGAAGAAGGAAAACCAGGCCTCGGTTCAGCAGGAAGATTTTGACTTGGGGAATCTTGAATCGACTGTGCCTCCGAGTGTTGCAAAGTACATCAAACACTTGCAGAGTGAAACTAAGAGGATCGGTGTTGAAAAGGAGACAATGCGGTTCGAGTTAACAAGTGCTCAAGCCATGATTAACATCCTCCAGTCTCGTGTCGAAACTCTTAGTAAAGAGAACGGAGAAATGAAGAAGATGATGATGAGAAATCCTTAG 1443 0.456 MGREPLLLPPPTTPIPPSTTTVSNLPLAVSAPSASATAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKPFRFDAIAEVDIYKSEPWDLSDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATLKGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEEMERVGNGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWEDGSGMVPGAELVCNGPLDRPLRIEYNNGGPSCSEGRKNVVQDTQSNNKTPLDVNKLPIETQNLLAVCKRESMTEFSSPEKDDSKRMHVDDEYPSPQTDNPKPLPLPQIYKRRRYNLNSNHTNVSGDSFPNSQDPCSSTITTAATTVPATAAPAKTTNPAPKKHFLSALVEFSLLESLESKKENQASVQQEDFDLGNLESTVPPSVAKYIKHLQSETKRIGVEKETMRFELTSAQAMINILQSRVETLSKENGEMKKMMMRNP 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04545 480 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 43 328 - -
Trre2g04545 480 MobiDBLite consensus disorder prediction 1 21 - -
Trre2g04545 480 SUPERFAMILY NAC domain 36 199 IPR036093 GO:0003677|GO:0006355
Trre2g04545 480 MobiDBLite consensus disorder prediction 288 324 - -
Trre2g04545 480 Coils Coil 448 475 - -
Trre2g04545 480 FunFam Nac domain-containing protein 86 53 201 - -
Trre2g04545 480 MobiDBLite consensus disorder prediction 291 312 - -
Trre2g04545 480 Pfam No apical meristem (NAM) protein 46 171 IPR003441 GO:0003677|GO:0006355
Trre2g04545 480 Gene3D NAC domain 53 201 IPR036093 GO:0003677|GO:0006355
Trre2g04545 480 ProSiteProfiles NAC domain profile. 44 198 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04545 Trre-Chr2 52868324 52873997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04545 24 474 NAC Transcription Factor Family AT3G10480 45.370 8.59e-120 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre2g04545 NAM 4.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04545 - - tpra:123908634 780.785