Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04543 ATGGCGAGAAACAAGCTGAAACTTGCATTTATCTCCGATGAATCGAAAAGGAGAGCAAGCTACTATAAAAGAAAGAACAGTCTCATAAAGAAGGTGAATGAACTCACGACTCTTTGTGATGTTCCAGCTTGTGCTGTAATTTCCAGTTCTTTTGATTCCCACACAGAGGTTTGGCCAAATCTAGAGGGAGCCAGTAAGGTGATTGAGAGGTATCAAAATTCAGTAGTGATAAATGAAAGCAAGAATGTCAGCCACGAGAGATTCCTCTTGCAAAGGACCACTAAAGCCAGAGATCAACTAAGAAAGTTGAAACAGGACAATCGTGAGAAAGAGCTGGATCTTCTTATGTTCAGGTATATGCAAAACAGCAATATCTCAGACAACCTGACTGCTGAAGGATTGAAAGATTTAGATAAGGTTGTTGGGAAGATGATGAAGGAAGTTGATAACAAGATTAATTAA 462 0.3918 MARNKLKLAFISDESKRRASYYKRKNSLIKKVNELTTLCDVPACAVISSSFDSHTEVWPNLEGASKVIERYQNSVVINESKNVSHERFLLQRTTKARDQLRKLKQDNREKELDLLMFRYMQNSNISDNLTAEGLKDLDKVVGKMMKEVDNKIN 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04543 153 Coils Coil 90 113 - -
Trre2g04543 153 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre2g04543 153 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre2g04543 153 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre2g04543 153 CDD MADS_SRF_like 2 59 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre2g04543 153 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Trre2g04543 153 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre2g04543 153 Gene3D - 13 147 IPR036879 GO:0003677|GO:0046983
Trre2g04543 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Trre2g04543 153 PANTHER MADS BOX PROTEIN 3 151 - -
Trre2g04543 153 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04543 Trre-Chr2 52833546 52834007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04543 3 148 Type I MADS-box Gene Family AT1G65330 38.095 2.76e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre2g04543 SRF-TF 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04543 - - gmx:100792290 165.622