Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04541 ATGGAACCAGCCCATGAACCTCAACACCAGCAACAACTTTCTTTGGCCTCTATGGAACACACCAACATCATCAAAGGCAAAAGAACCAAAAGGGTTAGGCCACAATCTCCTATACCTTTTTCCATCACTGCTAATTCTTCGACCGAAGGAGGAGGAGGAGTAGGAGGAGGAGGAGGAACAAGAGAAGATTGCAACAATGGTAACGATGTCGTCAACAACAACAACAACATCAATAATAATAACAGCTCTCCAACAACTTCTTATGTAGCAGAAAAACAAGAGGACAATATTCTTGATGAAGAATATGATATGGCAAATTGTTTGATTTTATTGGCACAAGGACAATCGAAAGAGTCACCGAAAAACACCGATGAATATGACGGTGGAATGATGAACTATACGAAATATAGCAGTAGAAAATTCATGGAAGCTGCTACTTTGGATTCTGGTAGAGCAGGTTACTATGTTTATGAATGCAAAACATGTAACAGAACTTTTCCTTCATTTCAAGCACTTGGTGGCCATAGAGCAAGTCACAAAAAACCAAAAGCATTGGCAATTGCTCATGAGAGAAAACAACTTTTTGATGATGATCAAGATTTTCAAATCAAAACCAATCATAAATCAATTTCCCTTCAATTCAACAACAATGGTAAAGGAAATCTTTATGCCGGAAACAACAACAACAGCAACAACAACAATAAGTCTAAGGTTCATGAGTGTTCCATTTGTGGTTCTGAATTCACATCTGGACAAGCACTTGGTGGACATATGAGGAGACACCGCGCGCCGGTGGGGACCGCCGCTCCTGCCAACACAACACTCTCCTTGACACCAATGGCTTTGGAACCTGATGAAGATCAACCTAGAAAGAAAAGGAATGTTTTATCATTGGATTTAGATCTCAATCTTCCTGCACCTGAAGATGAACATAGAGAATCAAAGTTTTCCTTTGCTTCCAAGCAACAACAACAACATGGCCAAAAACAACAACAGCAGCAACAACAGCAACAACAACACCAACAAAAAACAAGTCTTGTCTTCTCTTCACCGGCTTTGGTGGATTGTCATTACTAA 1077 0.4002 MEPAHEPQHQQQLSLASMEHTNIIKGKRTKRVRPQSPIPFSITANSSTEGGGGVGGGGGTREDCNNGNDVVNNNNNINNNNSSPTTSYVAEKQEDNILDEEYDMANCLILLAQGQSKESPKNTDEYDGGMMNYTKYSSRKFMEAATLDSGRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKALAIAHERKQLFDDDQDFQIKTNHKSISLQFNNNGKGNLYAGNNNNSNNNNKSKVHECSICGSEFTSGQALGGHMRRHRAPVGTAAPANTTLSLTPMALEPDEDQPRKKRNVLSLDLDLNLPAPEDEHRESKFSFASKQQQQHGQKQQQQQQQQQQHQQKTSLVFSSPALVDCHY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04541 358 SUPERFAMILY beta-beta-alpha zinc fingers 156 261 IPR036236 -
Trre2g04541 358 Pfam C2H2-type zinc finger 238 264 - -
Trre2g04541 358 Pfam C2H2-type zinc finger 156 182 - -
Trre2g04541 358 PANTHER ZINC FINGER PROTEIN ZAT5 83 330 - -
Trre2g04541 358 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Trre2g04541 358 MobiDBLite consensus disorder prediction 318 348 - -
Trre2g04541 358 SMART c2h2final6 157 179 IPR013087 -
Trre2g04541 358 SMART c2h2final6 239 261 IPR013087 -
Trre2g04541 358 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Trre2g04541 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 261 IPR013087 -
Trre2g04541 358 MobiDBLite consensus disorder prediction 267 290 - -
Trre2g04541 358 MobiDBLite consensus disorder prediction 37 62 - -
Trre2g04541 358 MobiDBLite consensus disorder prediction 308 348 - -
Trre2g04541 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
Trre2g04541 358 Gene3D Classic Zinc Finger 155 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04541 Trre-Chr2 52786357 52787433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04541 16 358 C2H2 Transcription Factor Family AT5G04390 45.213 1.31e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g04541 zf-C2H2_6 8.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04541 - - psat:127097550 490.73