Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04532 ATGTTTTCTAGGTTGTTATGTCCTCATGACCATGAAGGAAGTGTTGTTGTTGTTCAAGAAGAAACAAATCATCATCATAGTCACCTTGCTGACCCTTGTCTTGTTCTAACTTCTGATCCTAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGTTTTGTTGATGCTGTCACTCAACTTGGTGGTCCTAGCAAAGCCACCCCAAAAGCAATCATGAGGACCATGAACGTCAAGGGTTTGACACTCTATCATTTGAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAACAAGCTGGAAAAGATTCGGACGAGGGATGCAAAGATGCAATATCAGGTTCATATCTTCTTGAAAGCCCTAGTACTGAAAACTCATCTCCAAAGTTACCAGCTTCTGATGCAAATGAGGGTCATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAGAGTAAGCTACATTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAAGATGCAGAACGGAGATATATGGCCATGCTTGAGAGAGCATGTAAGATGTTAGCCGATCAGTTTATTGGTGATACACCTATAGACACAGACATCCAAAAATTTCAAGAGCTACCAAGTACCGAGCTAGTTGGAAACGGAATGCATGTTTCAGAAGTACCCTATATTCTCCAGCCCCAAGGTGCAAACTGTTCCGCTGAAAGTTGCCTAACATCACTTGAAAGTCTCAGAGGATTGACGCTAGAAGGATCACTTGGTGGTGGGACAAAGAGGATGCTGGGTTTGGACTCGATGGTAGCGCCTTTGATCTGGAGTGATACTAACATGAGAACTCAAGGCATTCATTTATCCCAAGTCAATCCTCAAGGAATAGCAAGGTATGGAATGTAG 891 0.4343 MFSRLLCPHDHEGSVVVVQEETNHHHSHLADPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDSDEGCKDAISGSYLLESPSTENSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGDTPIDTDIQKFQELPSTELVGNGMHVSEVPYILQPQGANCSAESCLTSLESLRGLTLEGSLGGGTKRMLGLDSMVAPLIWSDTNMRTQGIHLSQVNPQGIARYGM 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04532 296 Pfam MYB-CC type transfactor, LHEQLE motif 139 184 IPR025756 -
Trre2g04532 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 17 221 IPR044848 GO:0003700
Trre2g04532 296 MobiDBLite consensus disorder prediction 117 131 - -
Trre2g04532 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Trre2g04532 296 MobiDBLite consensus disorder prediction 117 137 - -
Trre2g04532 296 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
Trre2g04532 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Trre2g04532 296 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
Trre2g04532 296 Gene3D - 40 98 - -
Trre2g04532 296 FunFam Myb family transcription factor 40 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04532 Trre-Chr2 52678108 52682652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04532 30 240 G2-like Transcription Factor Family AT3G24120 48.511 2.00e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre2g04532 Myb_DNA-binding 8.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04532 - - vum:124825518 442.965