Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04520 ATGGAGCATCAATTAGTGTTGCTTCTTTGTTTTTCTACATTGTTATATGTTTCTTCAGCATTGAACTCTGAGGGTTTGGCTCTATTGTCACTCTTGAGTCACATGAATGTTGTTCCTCCTATCCTAAACTCCACATGGAAATCCTCTGATTCCACTCCATGTTCTTCATGGGAAGGAGTAAAATGTGATCATGCTTTAAATGTAATAACTCTTAATCTAAGTGATTATTCAATTTCTGGTCAATTAGGACCAGGAATTGGAAAATTGATTCACCTTCAAACCCTAGATTTGTCACCTAATGATTTTTCAGGAGAAATTCCTTCAGAATTAAGCAATTGTAGTATGCTTCAGTACATGGATCTTTCTTCAAACAACTTCAGTGGTAAAATTCCTCAATCCTTGTTTCAAATTAATCATTTGACAGATTTGTATCTCTTTAGTAATAGCTTAAGTGGTTCAATTCCTGCTAATATTGGAAATTGTAGTCAATTGATTACTGTAGATTTGAACTCGAATCGATTGGAGGGAGTTCTTCCCGAGAGTCTAAACGATCTAAAAGAACTTCAAGAACTAAGTCTCAATAGTAATAATCTTGAAGGTACCATTCAATTAGGGTTGAAAAATTGCAAAAACTTAAATTACTTGAGTCTTTCAGACAATAAATTTATTGGTAGTATTCCATCAAGTTTAGGGAATTGTAGTGGTCTAGAACAATTCTATGCTGCAATTAATAACTTAGAGGGTAGCATACCATCAAGCTTAGGTTTGCTTCGCAACCTTGATACTCTAATGATTCCAAACAATTATTTGTCTGGGAATATACCTCCACAAATTGGTAATTGTAAGTCTTTGGAAGTTTTACATTTGTATACCAATGAACTTGAGGGGGAAATTCCTAGTGAGTTGGGAAAGTTGAGTAAATTACAAGAGCTTCAATTGTTCGAAAACCATTTGGTAGGTGAAATTCCACTTAGCATATGGAAAATTCAAAGCCTTGAGCATGTCCATGTGTATACTAATAGTCTATCGGGGGAGTTACCTTTAGAGATGACCGAGCTCAAAAATCTCAAGAATATCTCATTGTTTAACAACCGATTCTCGGGAGTTATACCTCAAACCTTAGGAATTAATAGCAGTTTGATGCAGTTGGATTTTATGTTTAACATGTTCAATGGTACACTTCCGCCAAATCTTTGTTTTGGAAAGCAATTAGCAGCGTTGAATATGGGTGGTAATCAGTTTATTGGAAGCATACCTTCTGATGTAGGAAGGTGTACAACTCTCAAAAGGGTGAGACTCGAAGATAATAAGTTTTCCGGGCGTCTTCCTGATTTTGAAGAGAATCCAAATATCTCGTACTTGCGCATTGGCAACAACAATATCAACGGAACAATTCCGTCAAGTTTGAGTAACTGCACAAATCTCTCTCTTTTAGATCTGTCCATGAACAGCTTAACAGGCTTTGTACCTTTAGAGCTTGGAAACCTTGTGAATCTCCAGAGTTTGGATCTTTCTTACAATAATTTGGAAGGTCCTTTGCCACACCAACTTTCAAAGTGTACCAAAATGTTTAGTTTTGATGTAGGATTCAATTTCCTTAATGGTTCGTTTCCATCGAGTTTTCGGAGCTGGACAGAATTAGCCACTTTAATTCTTAGCGAGAATCATTTTAGTGACGGAATCCCAACTTTCCTGTCAGAATTTGAAAATCTCAATGACTTAAAACTTGGTGGAAATAACTTTGGAGGAAATATTCCGAAATCATTTGGAAAATTTCAGAGTTTGTCATATGATTTAAATCTAAGTGCTAATGGACTAGTAGGTGCAATTCCTGGTGAGATTGGAAACCTGAAGAGTCTGCAAATACTGGATCTATCTTGGAACAATTTGACAGGAAGCATACATGTTCTCGACGAGCTAAGTTCGTTATCCGAATTGAACATCTCATACAATTCTTTTGAAGGTTCTGTATCAGAAAAACTGACGAAATTATCGAATTCTTCTTCATCATTTTTGGACAATCCCGGCCTGTGTGCTAGCCTTTCGTTACCCAATGGGTTGAATTTCTCAAGAAGTAGCCATTTAAAGCTATGTAATCAAGATGCCATAAAATCAAAAGGTCACAGTAAAGTTGCAATTGTGATGATAGCACTTGGATCCTCGATACTTGTGGTGCTCTTGCTAGGGCTAATTTATATATTTTTAGTCAGAAAGTCTAAACAGGAAGCCATCATCACCGAAGAAAATGATTCTTCGGACCTTCTCAAGAAAGTGATGAAAGCTACAGAGAATCTAAATGATGAGTATATTATAGGAAGAGGTGCTGAAGGAGTTGTTTACAAAGCTGCAATAGGTCCAGACAATATTTTGGCGGTGAAGAAGCTTGTATTTGACGAGGACGAACGAAAACGCTTAAGCATGTTAAGAGAAATCGAAACACTTTCACAGATTAGACATAGAAATTTGGTGAAACTTGAAGGTGTTTGGTTGAAAGAAAATTATGGTCTAATCTCATACAAATACATGCCAAATGGAAGCCTTTATGAAGTTTTGCACGAGAAGAATCCGCCGCAATCGTTAAAATGGAATGTCAGGAATAAGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTTCATTATGACTGTGATCCTATCATAGTTCATAGAGACATCAAAACAAGCAACATACTTTTAGATTCTGATATGGAGCCTCATGTTGCCGATTTCGGCCTTGCTAAGCTTTTGGATCAGTCTTCTAGTTCTACCTCAACACAGTCAATAAATGTTTCTGGTACACTTGGTTATATTGCACCAGAGAATGCATATACAACTGTAATGGGAAAGGAATCTGATGTATACAGTTATGGAGTAGTTTTGCTTGAGTTGATATCAAGAAAGAAGGCAATAGATCCATCATTTATGGAAGGAATGGATATTGTTTCTTGGGTGAGATCATTGTGGGAGGAAACAGGAGTTGTTAATGAAATTGTTGATTCAGAACTTGCCAATGAAATTTCTAGATATAATTCAAATGTGTTGAAGGAAGTAACTAAGGTGCTTTTGGTGGCTTTCAAATGTACAGAAAGAGATCCACGTAGGAGACCTACAATGAGAGAGGTTATCAAGAATTTGTAG 3138 0.3649 MEHQLVLLLCFSTLLYVSSALNSEGLALLSLLSHMNVVPPILNSTWKSSDSTPCSSWEGVKCDHALNVITLNLSDYSISGQLGPGIGKLIHLQTLDLSPNDFSGEIPSELSNCSMLQYMDLSSNNFSGKIPQSLFQINHLTDLYLFSNSLSGSIPANIGNCSQLITVDLNSNRLEGVLPESLNDLKELQELSLNSNNLEGTIQLGLKNCKNLNYLSLSDNKFIGSIPSSLGNCSGLEQFYAAINNLEGSIPSSLGLLRNLDTLMIPNNYLSGNIPPQIGNCKSLEVLHLYTNELEGEIPSELGKLSKLQELQLFENHLVGEIPLSIWKIQSLEHVHVYTNSLSGELPLEMTELKNLKNISLFNNRFSGVIPQTLGINSSLMQLDFMFNMFNGTLPPNLCFGKQLAALNMGGNQFIGSIPSDVGRCTTLKRVRLEDNKFSGRLPDFEENPNISYLRIGNNNINGTIPSSLSNCTNLSLLDLSMNSLTGFVPLELGNLVNLQSLDLSYNNLEGPLPHQLSKCTKMFSFDVGFNFLNGSFPSSFRSWTELATLILSENHFSDGIPTFLSEFENLNDLKLGGNNFGGNIPKSFGKFQSLSYDLNLSANGLVGAIPGEIGNLKSLQILDLSWNNLTGSIHVLDELSSLSELNISYNSFEGSVSEKLTKLSNSSSSFLDNPGLCASLSLPNGLNFSRSSHLKLCNQDAIKSKGHSKVAIVMIALGSSILVVLLLGLIYIFLVRKSKQEAIITEENDSSDLLKKVMKATENLNDEYIIGRGAEGVVYKAAIGPDNILAVKKLVFDEDERKRLSMLREIETLSQIRHRNLVKLEGVWLKENYGLISYKYMPNGSLYEVLHEKNPPQSLKWNVRNKIAVGIAHGLAYLHYDCDPIIVHRDIKTSNILLDSDMEPHVADFGLAKLLDQSSSSTSTQSINVSGTLGYIAPENAYTTVMGKESDVYSYGVVLLELISRKKAIDPSFMEGMDIVSWVRSLWEETGVVNEIVDSELANEISRYNSNVLKEVTKVLLVAFKCTERDPRRRPTMREVIKNL 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04520 1045 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 733 841 - -
Trre2g04520 1045 Gene3D Transferase(Phosphotransferase) domain 1 842 1045 - -
Trre2g04520 1045 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672|GO:0006468
Trre2g04520 1045 Gene3D Ribonuclease Inhibitor 447 694 IPR032675 -
Trre2g04520 1045 FunFam Serine/threonine-protein kinase-like protein CCR4 842 1045 - -
Trre2g04520 1045 SMART serkin_6 765 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04520 1045 Pfam Protein kinase domain 768 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04520 1045 Pfam Leucine rich repeat N-terminal domain 22 63 IPR013210 -
Trre2g04520 1045 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 20 179 - -
Trre2g04520 1045 PRINTS Leucine-rich repeat signature 496 509 - -
Trre2g04520 1045 PRINTS Leucine-rich repeat signature 475 488 - -
Trre2g04520 1045 Pfam Leucine rich repeat 449 509 IPR001611 GO:0005515
Trre2g04520 1045 Pfam Leucine rich repeat 598 652 IPR001611 GO:0005515
Trre2g04520 1045 SUPERFAMILY L domain-like 48 395 - -
Trre2g04520 1045 Gene3D Phosphorylase Kinase; domain 1 733 841 - -
Trre2g04520 1045 Gene3D Ribonuclease Inhibitor 213 446 IPR032675 -
Trre2g04520 1045 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 402 686 - -
Trre2g04520 1045 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 305 1045 - -
Trre2g04520 1045 ProSiteProfiles Leucine-rich repeat profile. 619 641 IPR001611 GO:0005515
Trre2g04520 1045 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 180 274 - -
Trre2g04520 1045 SUPERFAMILY Protein kinase-like (PK-like) 754 1044 IPR011009 -
Trre2g04520 1045 SMART LRR_typ_2 185 209 IPR003591 -
Trre2g04520 1045 SMART LRR_typ_2 617 643 IPR003591 -
Trre2g04520 1045 SMART LRR_typ_2 137 161 IPR003591 -
Trre2g04520 1045 SMART LRR_typ_2 496 520 IPR003591 -
Trre2g04520 1045 SMART LRR_typ_2 89 113 IPR003591 -
Trre2g04520 1045 SMART LRR_typ_2 305 329 IPR003591 -
Trre2g04520 1045 SMART LRR_typ_2 257 281 IPR003591 -
Trre2g04520 1045 FunFam Leucine-rich repeat receptor protein kinase EMS1 275 373 - -
Trre2g04520 1045 Gene3D Ribonuclease Inhibitor 137 209 IPR032675 -
Trre2g04520 1045 Gene3D Ribonuclease Inhibitor 25 136 IPR032675 -
Trre2g04520 1045 SUPERFAMILY RNI-like 265 652 - -
Trre2g04520 1045 ProSiteProfiles Protein kinase domain profile. 765 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04520 Trre-Chr2 52598805 52602040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04520 6 1045 Receptor kinase-like Gene Family AT1G17750 49.723 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre2g04520 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04520 - - gmx:100802056 1399.03