Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04518 ATGAATAACACTTCCAGTTCTGATAACCCTTCAGAGAACTTAAATATATTAACATATGATTATACTGGATTGTCTTTTGCCCTTATCTTCCTCATGATGTTCATAGCTCTATTTTCATGTTACTGTAACCGTAGAAACCGACAAAACAGGCAGCAATTTAGAGGAAGAACTTCTTCTAACAGAACAATGGTCATCACAGAGATAGATACTGAAGTGAATATGGAAGAACAAGATTCCATTCTTAATAGTTACCCTATTTTGTTGTACTCTCAAGTCAAGCTTCATCATAAAGATGATTCAACATCACTCATTTGCTCAATTTGTTTGGCAGATTATAAAGATTCTGAGTTGTTGCGACTCTTATCTGATTGTGGTCACTTTTTTCATAAGGAATGTGTTGCTACATGGTTTAGGCTTAACATGTCATGTCCCATGTGTCGGAACTCGCCACTTCCAACACCCATTGTTCAAGTTACACCATTGGCAAACCAAACCACACATGATTGA 507 0.3649 MNNTSSSDNPSENLNILTYDYTGLSFALIFLMMFIALFSCYCNRRNRQNRQQFRGRTSSNRTMVITEIDTEVNMEEQDSILNSYPILLYSQVKLHHKDDSTSLICSICLADYKDSELLRLLSDCGHFFHKECVATWFRLNMSCPMCRNSPLPTPIVQVTPLANQTTHD 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04518 168 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Trre2g04518 168 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 157 IPR045899 -
Trre2g04518 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 151 IPR013083 -
Trre2g04518 168 Pfam Ring finger domain 105 147 IPR001841 -
Trre2g04518 168 SUPERFAMILY RING/U-box 82 151 - -
Trre2g04518 168 SMART ringv_2 104 147 IPR011016 GO:0008270
Trre2g04518 168 SMART ring_2 105 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04518 Trre-Chr2 52590403 52590909 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04518 23 163 C3H Transcription Factor Family AT2G35910 37.931 5.48e-26 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04518 - - adu:107466513 162.54