Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g04516 | ATGATGAACAACAACAGCACCTCACCACCCCAAAACAACCACGATTTTGACGCGAATGGGTTCACGTACATCTTAACATTTGTATTCGCTCTCGTATTCTTGATTCTTACAATTGTTGTTGCTTGTGTTCGACTTCGTATGTCCCGGGGTCCAGACATGATCAATATTTTGTCAGGTTTTCCACCACATCGTCAGGAAGACTCGATCATGGAGCAAGGGCTCCGCCATAATAGGGACACAAGTTTTGAAGGATATCCAAAAATATTGTACTCTCAAATTGAAAAGAATATTTTAGGTGGTTCTTCAACTTCAAGTTGCTCTATTTGCTTAGGGGACTACAAAGAAAGTGACATTTTGAGGTTACTTCCTAATTGTGGCCATCTTTATCATGTTGCTTGTGTTGATTCATGGCTTAGGTTACATTCTACTTGTCCCATATGTAGAAAACCATTGCTAGCTTCAAGCTAA | 468 | 0.3996 | MMNNNSTSPPQNNHDFDANGFTYILTFVFALVFLILTIVVACVRLRMSRGPDMINILSGFPPHRQEDSIMEQGLRHNRDTSFEGYPKILYSQIEKNILGGSSTSSCSICLGDYKESDILRLLPNCGHLYHVACVDSWLRLHSTCPICRKPLLASS | 155 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g04516 | 155 | SUPERFAMILY | RING/U-box | 105 | 152 | - | - | |
Trre2g04516 | 155 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - | |
Trre2g04516 | 155 | SMART | ring_2 | 106 | 147 | IPR001841 | - | |
Trre2g04516 | 155 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 2 | 152 | IPR045899 | - | |
Trre2g04516 | 155 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 152 | IPR013083 | - | |
Trre2g04516 | 155 | Pfam | Ring finger domain | 105 | 148 | IPR001841 | - | |
Trre2g04516 | 155 | CDD | RING-H2_EL5-like | 105 | 148 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g04516 | Trre-Chr2 | 52555526 | 52555993 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g04516 | 2 | 148 | C3H Transcription Factor Family | AT2G35910 | 38.217 | 3.18e-24 | 92.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g04516 | - | - | gmx:102663718 | 191.815 |