Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04506 ATGGCGGGGAACTTCAGATTCATGATGGATCAGAAGGATATTGTAAGATTCTTGACTACAACTATTGATAGTTTTATTCAAGATAGATTAATAAACAAAGAACAAAGAACACAACATAAAGATCAATGTGCTGAAAGGTTAGCAGCTGAAGATGAAAATGGTGACAAAGAAACCGAGGTAGAATATTCGGATCAAGCAGTATTGGCAAATCTAGATTGGGGTATTGAAGCTCTTGAAGAAGCTATTAATACCTATAATATGGAAACTAAGCTTGCAAGATTAGATTATGCTGAGAAAATGTTGCAAGTATGTGCAATGTTGAATCCTAAGCAAAAAACTGCTGGAGTACCAAATTCATATTTATCAGCTTGGGCACATTTAAATTTATCCTATTTATGGAAATTGAGGAACAATATTCAGAGTTGTATTTTTCATGCTCTTGAGATGTTCATCGTTGATCCGTTTTTCTCTAGGATTGATTTCGCGCCTGAGTTATGGAAAAACCTGTTTCTTCCACATATGAGTTCAATTGTAGGATGGTATTCAGAGGAGAGACATAAGCTTATGATAGAAGTGATGCCTGAATCTTCTGATTTTTCCTATACTGGTGATTTTGATAAAGTTTTCAATGAGTCTTTGGTATTTTCTATGAGGCCGAATCAACTAGATAAATTGCAAAAACTTGAGCAGCTTTATGGAGAGTCTTTAGATGAGAACACAAAGCTATATGCAAAATATTATAATGATTGTATGAACTCTGATTCTACCTCAAGTAAGAAGGTTATTCCAATGTTGCCGATTGCTGAGCCTCCGATGACTCCTTTGCATGAGTTGAGCCGGTCTGTTCCTGATTTCGTAAAATTTGGTCCTATTTTGCCTAAGAGCTCTGGATTTTCTATGACAACAAGAAGATCTAATGATGTTTTAAATGAAACAACCAGAGAGAATTTAACTTCCAATTCCAACCATTCAAAGGGGGAGAAATCATCCATGTGGGGTGCTAAGGAGAGCATAATTGAAGAGATTGAAGATGATTCAGATTCCGAGCATTATGACGCGTCTGTGGATTCTGATAAAATCAATATTTTCTCACCCGACTTGAAGACAGATATCAAGGATGAGGATGTTGAACCAAAAGTATATCGATCAAACCAGAAGGATCAAATGCAATCTCCTAACATCTCTCCTATGGAATCCCCAAGAGCTTCTCGAAATCGTTCATCTACAAATCCTCATATCCATAGGAAAAAAGAATCAAAGTTTTTGCGGTTACTATCTAATCGTTTTAGGGGATCAACTATTTCCGATCACTCTCTATCATCATCTCCTGACACGAGCTCTGATCATATTGTCAACGGTGATGAAGAAGAAGCGATGGTCTTGAATAATATTAAGAGGAAAAATGATAGTCAAACAGCAAGTGTAAATCAAGACCATGAGAATAGTCTGGTGCTGAATGACAGTTCCCATTGTGAAAGTGAGGATGGATATCAAAGCTCAACTTCATTTCCAAAATTAGGGAAACTGACTATTGGATCAAAACCACCCAAAGATTTTGTTTGTCCAATCACAGGTCAGATATTTAGCGATCCTGTCACCCTTGAAACAGGCCAAACCTATGAAAGAAAAGCGATTCAAGAGTGGCTCGGAACAGGAAACACAACATGTCCGATCACGAGGCAGCCTCTATCTGCAAACATCTTACCGAAAACAAACTATGTTTTGAAGAGATTGATAGTATCATGGAAAGAACAGCATCCTGAACTAGCTCAAGAATTCTCAAATTCTAACACGCCAAGGGGTTCTTCATGTTCTCCATCTGCAAAAGACATCGCAATGATTTCGACTATACAAAGAACGACTGATTCACCAAGTCAGAAGTACAAAGAAGATTATATTAGACAACGGAACAATAGATTTACAAGGGTTGCTGTCGGTGCATCTCCAACTAGTGTGTTGTCACAAGCTGCAGTTGAAACGATTATAAATTCCTTGACACCTTACATCACAAGACTCTGTACATCAGAAAACTTGCAGGACTGTGAAGAAGCTGTATTGGAAATAGCGAGATTGTGGAAGGACTCAAAGACTGATCCTCAGATTCATTCTTATTTATCAAAACCAACTGTCATAAGTGGTTTAGTGGAAATTCTCTCAGCTTCTCTTAATAGAGAAGTTCTGAGAAGATCGATATATATTCTTTCCGAACTAATTTTGGCAGATGAAAGAGTTGGAGAAACACTTAATAGTGTAGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGTTTGAGGCTGCACTTCTTATTTACCAACTACGGCCAGTTTTTGCTCAGCTTTCAGAACATGAACTTATACCCTCTCTTATCCAAGTAATCCAGAACAAAAATGAGGATATAGATGGTTTTCAGTTATCTATAGACCCTGGAGATGCTTCCATAGCAATTCTTGAGCAAATTTTAATGGGAGGAGATGAATATAACAGGTCTGTCAATGCTTCAAGTGTTATCTCGGCAAATGGAATTCCGGCCATAGTAAAGTATTTGGACAGAATGGAAGGAAGGAGGTCTGTCATTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGATCTCAATAGCAAATAGAATTGAATTGTTGCCTATTCTTGAATTATTTCATGCTGGAAATGATAGCGTGAGAGGAATCTGTGTGGAGTTTCTCTCAGAACTGGTTCGACTGAATAGAAGGACGTTCAGCAATCAGATATTACAGATAATCAGAGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCGCCAATGGAACATCAAATTGCTGTTTCCAGTCTTCTTATTCAGCTAGATCTTTTGGTTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTTTGGCAAAAGGACTTTTCAAATAATCAAATGAAAGCTTTAGATGCTTTACTATTTCTTATCGGACACGTCACTTCCTCAGGAAAGTCGTATACTGAAGCTTGGTTGCTGAAGGTTGCAGGATTTGATCAGCCTTACAATGTTTTAATGAAGGCCGAGCAATTGGGACACCATGACAATGATTTTATGGAAACAATGGAGGATGAAAAAAATGCCATGAAATCGTGGCAGAAAAGGGTAGCTTCAGTACTTTGCAATCATGAAAACGGCTCAATATTTCAAGCTTTGGAAGAATGCCTAAAGAGTAACTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACATGGCTCACACACATGCTCTTTACTCTACCTGATACTGGTGTAAGGGATATTGCTCGGAAATCCCTGCTCGAGGCACTTATAAATGTCCTCCAGTCATCCAAGAACCTAGAGGAAAAGATCCTGGCTACCCTAGCTTTGAAGTCTTTCATTAGTGATCCAACTGCTCATGAAGCACTTAGAGTTTATGCTAAAAGCATCTATAGAATCTTGAGGAAGCTGAAGAAATATTCAACAGTTGCAGCTGATATTTTGAAAGCCTTACTAAACTTAAATTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTAGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTGCTTTCTTTGCTTTACTTCAATGGTCAGGTCTTGAGTGGACATGCTGATGGAACTATCAAGGTATGGGACGCAAGGAAAAGAATACCGCGAGTAATTCAAGAAACTCGTGAGCACAAAAAAGCTGTTACATCGCTTTGCTCTTCTGTTGATAGACTATACAGTTCTTCCTTGGACAAAACAATCCGGGTTTGGACGATTAAACCTGACGGGATTAAATGTATAGATGTTTATGACGTTAAGGAGGCAGTGTATGAACTAGCAGCCAATGCTGAATTGGCATGCTATGTAACTCAAGGAACAGGAGTTTTTAATTGGTTAGATACTCCGAAGCTCATCAATTTCAACAAATATGTGAAATGTCTCGCTGTTGCTGGGGACAAACTGTATTGTGGTTGCTCTGGTTACAGCATACAGGAGGTTGACTTATCGAAATATACATCAACTTCATTCTTCACTGGTACAAGAAAATTGTTGGGAAAACAAACCATACATTCCATTCAAATTCATGATGATTTCCTCTTTGCTTGTGGTTCTTCTGTTGATGGAACTGCAGGAAAGATATTTTCACTTTCCACCAAAATGGTGATGGGATCACTCTCAACTGGACTCGACATCCATCGTGCAGCCATCAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAAGTTTGGCTGAAAGATAAGTTCACCCGAGTCGCTTCCATCAAAATGGCAGGCGCTCACACAAAAATTACATCATTAGTGTCAGATGTTGATGGCATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCTTTAGATTAA 4467 0.3844 MAGNFRFMMDQKDIVRFLTTTIDSFIQDRLINKEQRTQHKDQCAERLAAEDENGDKETEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIQSCIFHALEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHKLMIEVMPESSDFSYTGDFDKVFNESLVFSMRPNQLDKLQKLEQLYGESLDENTKLYAKYYNDCMNSDSTSSKKVIPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSSGFSMTTRRSNDVLNETTRENLTSNSNHSKGEKSSMWGAKESIIEEIEDDSDSEHYDASVDSDKINIFSPDLKTDIKDEDVEPKVYRSNQKDQMQSPNISPMESPRASRNRSSTNPHIHRKKESKFLRLLSNRFRGSTISDHSLSSSPDTSSDHIVNGDEEEAMVLNNIKRKNDSQTASVNQDHENSLVLNDSSHCESEDGYQSSTSFPKLGKLTIGSKPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQPLSANILPKTNYVLKRLIVSWKEQHPELAQEFSNSNTPRGSSCSPSAKDIAMISTIQRTTDSPSQKYKEDYIRQRNNRFTRVAVGASPTSVLSQAAVETIINSLTPYITRLCTSENLQDCEEAVLEIARLWKDSKTDPQIHSYLSKPTVISGLVEILSASLNREVLRRSIYILSELILADERVGETLNSVDSDFDCLATLLKNGLFEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKNEDIDGFQLSIDPGDASIAILEQILMGGDEYNRSVNASSVISANGIPAIVKYLDRMEGRRSVISILLCCMQAEKSCKISIANRIELLPILELFHAGNDSVRGICVEFLSELVRLNRRTFSNQILQIIRDEGAFSTMHTFLVYLQMAPMEHQIAVSSLLIQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNNQMKALDALLFLIGHVTSSGKSYTEAWLLKVAGFDQPYNVLMKAEQLGHHDNDFMETMEDEKNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTGVRDIARKSLLEALINVLQSSKNLEEKILATLALKSFISDPTAHEALRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLLYFNGQVLSGHADGTIKVWDARKRIPRVIQETREHKKAVTSLCSSVDRLYSSSLDKTIRVWTIKPDGIKCIDVYDVKEAVYELAANAELACYVTQGTGVFNWLDTPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKYTSTSFFTGTRKLLGKQTIHSIQIHDDFLFACGSSVDGTAGKIFSLSTKMVMGSLSTGLDIHRAAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGAHTKITSLVSDVDGMMLFVGSSDGKIQVWALD 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04506 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1224 1237 IPR001680 GO:0005515
Trre2g04506 1488 Gene3D - 1302 1488 IPR015943 GO:0005515
Trre2g04506 1488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 508 597 IPR013083 -
Trre2g04506 1488 Gene3D - 656 1196 IPR011989 -
Trre2g04506 1488 ProSiteProfiles U-box domain profile. 514 589 IPR003613 GO:0004842|GO:0016567
Trre2g04506 1488 SMART Ubox_2 518 582 IPR003613 GO:0004842|GO:0016567
Trre2g04506 1488 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1454 1488 - -
Trre2g04506 1488 Pfam WD domain, G-beta repeat 1221 1237 IPR001680 GO:0005515
Trre2g04506 1488 Pfam WD domain, G-beta repeat 1248 1278 IPR001680 GO:0005515
Trre2g04506 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1249 1281 IPR001680 GO:0005515
Trre2g04506 1488 Pfam U-box domain 516 586 IPR003613 GO:0004842|GO:0016567
Trre2g04506 1488 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1487 - -
Trre2g04506 1488 MobiDBLite consensus disorder prediction 309 333 - -
Trre2g04506 1488 MobiDBLite consensus disorder prediction 309 328 - -
Trre2g04506 1488 SMART WD40_4 1445 1486 IPR001680 GO:0005515
Trre2g04506 1488 SMART WD40_4 1358 1403 IPR001680 GO:0005515
Trre2g04506 1488 SMART WD40_4 1199 1237 IPR001680 GO:0005515
Trre2g04506 1488 SMART WD40_4 1242 1279 IPR001680 GO:0005515
Trre2g04506 1488 MobiDBLite consensus disorder prediction 371 420 - -
Trre2g04506 1488 SUPERFAMILY WD40 repeat-like 1206 1484 IPR036322 GO:0005515
Trre2g04506 1488 SUPERFAMILY RING/U-box 514 587 - -
Trre2g04506 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1454 1488 IPR001680 GO:0005515
Trre2g04506 1488 MobiDBLite consensus disorder prediction 383 407 - -
Trre2g04506 1488 CDD RING-Ubox_PUB 516 568 IPR045210 -
Trre2g04506 1488 Gene3D - 1197 1301 IPR015943 GO:0005515
Trre2g04506 1488 SUPERFAMILY ARM repeat 654 1188 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04506 Trre-Chr2 52491252 52498067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04506 508 912 U-box Gene Family AT1G23030 24.766 5.81e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04506 - - gmx:100776142 2409.02