Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04505 ATGGCGGGGAACTTCAGATTCATGATGGATCAGAAGGATATTGTAAGATTCTTGACTACAACTATTGATAGTTTTATTCAAGATAGATTAATAAACAAAGAACAAAGAACACAACATAAAGATCAATGTGCTGAAAGGTTAGCAGCTGAAGATGAAAATGGTGACAAAGAAACCGAGGTAGAATATTCGGATCAAGCAGTATTGGCAAATCTAGATTGGGGTATTGAAGCTCTTGAAGAAGCTATTAATACCTATAATATGGAAACTAAGCTTGCAAGATTAGATTATGCTGAGAAAATGTTGCAAGTATGTGCAATGTTGAATCCTAAGCAAAAAACTGCTGGAGTACCAAATTCATATTTATCAGCTTGGGCACATTTAAATTTATCCTATTTATGGAAATTGAGGAACAATATTCAGAGTTGTATTTTTCATGCTCTTGAGATGTTCATCGTTGATCCGTTTTTCTCTAGGATTGATTTCGCGCCTGAGTTATGGAAAAACCTGTTTCTTCCACATATGAGTTCAATTGTAGGATGGTATTCAGAGGAGAGACATAAGCTTATGATAGAAGTGATGCCTGAATCTTCTGATTTTTCCTATACTGGTGATTTTGATAAAGTTTTCAATGAGTCTTTGGTATTTTCTATGAGGCCGAATCAACTAGATAAATTGCAAAAACTTGAGCAGCTTTATGGAGAGTCTTTAGATGAGAACACAAAGCTATATGCAAAATATTATAATGATTGTATGAACTCTGATTCTACCTCAAGTAAGAAGGTTATTCCAATGTTGCCGATTGCTGAGCCTCCGATGACTCCTTTGCATGAGTTGAGCCGGTCTGTTCCTGATTTCGTAAAATTTGGTCCTATTTTGCCTAAGAGCTCTGGATTTTCTATGACAACAAGAAGATCTAATGATGTTTTAAATGAAACAACCAGAGAGAATTTAACTTCCAATTCCAACCATTCAAAGGGGGAGAAATCATCCATGTGGGGTGCTAAGGAGAGCATAATTGAAGAGATTGAAGATGATTCAGATTCCGAGCATTATGACGCGTCTGTGGATTCTGATAAAATCAATATTTTCTCACCCGACTTGAAGACAGATATCAAGGATGAGGATGTTGAACCAAAAGTATATCGATCAAACCAGAAGGATCAAATGCAATCTCCTAACATCTCTCCTATGGAATCCCCAAGAGCTTCTCGAAATCGTTCATCTACAAATCCTCATATCCATAGGAAAAAAGAATCAAAGTTTTTGCGGTTACTATCTAATCGTTTTAGGGGATCAACTATTTCCGATCACTCTCTATCATCATCTCCTGACACGAGCTCTGATCATATTGTCAACGGTGATGAAGAAGAAGCGATGGTCTTGAATAATATTAAGAGGAAAAATGATAGTCAAACAGCAAGTGTAAATCAAGACCATGAGAATAGTCTGGTGCTGAATGACAGTTCCCATTGTGAAAGTGAGGATGGATATCAAAGCTCAACTTCATTTCCAAAATTAGGGAAACTGACTATTGGATCAAAACCACCCAAAGATTTTGTTTGTCCAATCACAGGTCAGATATTTAGCGATCCTGTCACCCTTGAAACAGGCCAAACCTATGAAAGAAAAGCGATTCAAGAGTGGCTCGGAACAGGAAACACAACATGTCCGATCACGAGGCAGCCTCTATCTGCAAACATCTTACCGAAAACAAACTATGTTTTGAAGAGATTGATAGTATCATGGAAAGAACAGCATCCTGAACTAGCTCAAGAATTCTCAAATTCTAACACGCCAAGGGGTTCTTCATGTTCTCCATCTGCAAAAGACATCGCAATGATTTCGACTATACAAAGAACGACTGATTCACCAAGTCAGAAGTACAAAGAAGATTATATTAGACAACGGAACAATAGATTTACAAGGGTTGCTGTCGGTGCATCTCCAACTAGTGTGTTGTCACAAGCTGCAGTTGAAACGATTATAAATTCCTTGACACCTTACATCACAAGACTCTGTACATCAGAAAACTTGCAGGACTGTGAAGAAGCTGTATTGGAAATAGCGAGATTGTGGAAGGACTCAAAGACTGATCCTCAGATTCATTCTTATTTATCAAAACCAACTGTCATAAGTGGTTTAGTGGAAATTCTCTCAGCTTCTCTTAATAGAGAAGTTCTGAGAAGATCGATATATATTCTTTCCGAACTAATTTTGGCAGATGAAAGAGTTGGAGAAACACTTAATAGTGTAGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGTTTGAGGCTGCACTTCTTATTTACCAACTACGGCCAGTTTTTGCTCAGCTTTCAGAACATGAACTTATACCCTCTCTTATCCAAGTAATCCAGAACAAAAATGAGGATATAGATGGTTTTCAGTTATCTATAGACCCTGGAGATGCTTCCATAGCAATTCTTGAGCAAATTTTAATGGGAGGAGATGAATATAACAGGTCTGTCAATGCTTCAAGTGTTATCTCGGCAAATGGAATTCCGGCCATAGTAAAGTATTTGGACAGAATGGAAGGAAGGAGGTCTGTCATTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGATCTCAATAGCAAATAGAATTGAATTGTTGCCTATTCTTGAATTATTTCATGCTGGAAATGATAGCGTGAGAGGAATCTGTGTGGAGTTTCTCTCAGAACTGGTTCGACTGAATAGAAGGACGTTCAGCAATCAGATATTACAGATAATCAGAGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCGCCAATGGAACATCAAATTGCTGTTTCCAGTCTTCTTATTCAGCTAGATCTTTTGGTTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTTTGGCAAAAGGACTTTTCAAATAATCAAATGAAAGCTTTAGATGCTTTACTATTTCTTATCGGACACGTCACTTCCTCAGGAAAGTCGTATACTGAAGCTTGGTTGCTGAAGGTTGCAGGATTTGATCAGCCTTACAATGTTTTAATGAAGGCCGAGCAATTGGGACACCATGACAATGATTTTATGGAAACAATGGAGGATGAAAAAAATGCCATGAAATCGTGGCAGAAAAGGGTAGCTTCAGTACTTTGCAATCATGAAAACGGCTCAATATTTCAAGCTTTGGAAGAATGCCTAAAGAGTAACTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACATGGCTCACACACATGCTCTTTACTCTACCTGATACTGGTGTAAGGGATATTGCTCGGAAATCCCTGCTCGAGGCACTTATAAATGTCCTCCAGTCATCCAAGAACCTAGAGGAAAAGATCCTGGCTACCCTAGCTTTGAAGTCTTTCATTAGTGATCCAACTGCTCATGAAGCACTTAGAGTTTATGCTAAAAGCATCTATAGAATCTTGAGGAAGCTGAAGAAATATTCAACAGTTGCAGCTGATATTTTGAAAGCCTTACTAAACTTAAATTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTAGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTGCTTTCTTTGCTTTACTTCAATGGTCAGGTCTTGAGTGGACATGCTGATGGAACTATCAAGGTATGGGACGCAAGGAAAAGAATACCGCGAGTAATTCAAGAAACTCGTGAGCACAAAAAAGCTGTTACATCGCTTTGCTCTTCTGTTGATAGACTATACAGTTCTTCCTTGGACAAAACAATCCGGGTTTGGACGATTAAACCTGACGGGATTAAATGTATAGATGTTTATGACGTTAAGGAGGCAGTGTATGAACTAGCAGCCAATGCTGAATTGGCATGCTATGTAACTCAAGGAACAGGAGTTAAGGTTTTTAATTGGTTAGATACTCCGAAGCTCATCAATTTCAACAAATATGTGAAATGTCTCGCTGTTGCTGGGGACAAACTGTATTGTGGTTGCTCTGGTTACAGCATACAGGAGGTTGACTTATCGAAATATACATCAACTTCATTCTTCACTGGTACAAGAAAATTGTTGGGAAAACAAACCATACATTCCATTCAAATTCATGATGATTTCCTCTTTGCTTGTGGTTCTTCTGTTGATGGAACTGCAGGAAAGATATTTTCACTTTCCACCAAAATGGTGATGGGATCACTCTCAACTGGACTCGACATCCATCGTGCAGCCATCAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAAGTTTGGCTGAAAGATAAGTTCACCCGAGTCGCTTCCATCAAAATGGCAGGCGCTCACACAAAAATTACATCATTAGTGTCAGATGTTGATGGCATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCTTTAGATTAA 4473 0.3843 MAGNFRFMMDQKDIVRFLTTTIDSFIQDRLINKEQRTQHKDQCAERLAAEDENGDKETEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIQSCIFHALEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHKLMIEVMPESSDFSYTGDFDKVFNESLVFSMRPNQLDKLQKLEQLYGESLDENTKLYAKYYNDCMNSDSTSSKKVIPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSSGFSMTTRRSNDVLNETTRENLTSNSNHSKGEKSSMWGAKESIIEEIEDDSDSEHYDASVDSDKINIFSPDLKTDIKDEDVEPKVYRSNQKDQMQSPNISPMESPRASRNRSSTNPHIHRKKESKFLRLLSNRFRGSTISDHSLSSSPDTSSDHIVNGDEEEAMVLNNIKRKNDSQTASVNQDHENSLVLNDSSHCESEDGYQSSTSFPKLGKLTIGSKPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQPLSANILPKTNYVLKRLIVSWKEQHPELAQEFSNSNTPRGSSCSPSAKDIAMISTIQRTTDSPSQKYKEDYIRQRNNRFTRVAVGASPTSVLSQAAVETIINSLTPYITRLCTSENLQDCEEAVLEIARLWKDSKTDPQIHSYLSKPTVISGLVEILSASLNREVLRRSIYILSELILADERVGETLNSVDSDFDCLATLLKNGLFEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKNEDIDGFQLSIDPGDASIAILEQILMGGDEYNRSVNASSVISANGIPAIVKYLDRMEGRRSVISILLCCMQAEKSCKISIANRIELLPILELFHAGNDSVRGICVEFLSELVRLNRRTFSNQILQIIRDEGAFSTMHTFLVYLQMAPMEHQIAVSSLLIQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNNQMKALDALLFLIGHVTSSGKSYTEAWLLKVAGFDQPYNVLMKAEQLGHHDNDFMETMEDEKNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTGVRDIARKSLLEALINVLQSSKNLEEKILATLALKSFISDPTAHEALRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLLYFNGQVLSGHADGTIKVWDARKRIPRVIQETREHKKAVTSLCSSVDRLYSSSLDKTIRVWTIKPDGIKCIDVYDVKEAVYELAANAELACYVTQGTGVKVFNWLDTPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKYTSTSFFTGTRKLLGKQTIHSIQIHDDFLFACGSSVDGTAGKIFSLSTKMVMGSLSTGLDIHRAAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGAHTKITSLVSDVDGMMLFVGSSDGKIQVWALD 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04505 1490 Gene3D - 657 1194 IPR011989 -
Trre2g04505 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1224 1237 IPR001680 GO:0005515
Trre2g04505 1490 Gene3D - 1301 1490 IPR015943 GO:0005515
Trre2g04505 1490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 508 597 IPR013083 -
Trre2g04505 1490 ProSiteProfiles U-box domain profile. 514 589 IPR003613 GO:0004842|GO:0016567
Trre2g04505 1490 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1489 - -
Trre2g04505 1490 SMART Ubox_2 518 582 IPR003613 GO:0004842|GO:0016567
Trre2g04505 1490 Pfam WD domain, G-beta repeat 1221 1237 IPR001680 GO:0005515
Trre2g04505 1490 Pfam WD domain, G-beta repeat 1248 1278 IPR001680 GO:0005515
Trre2g04505 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1249 1281 IPR001680 GO:0005515
Trre2g04505 1490 Pfam U-box domain 516 586 IPR003613 GO:0004842|GO:0016567
Trre2g04505 1490 SMART WD40_4 1360 1405 IPR001680 GO:0005515
Trre2g04505 1490 SMART WD40_4 1199 1237 IPR001680 GO:0005515
Trre2g04505 1490 SMART WD40_4 1447 1488 IPR001680 GO:0005515
Trre2g04505 1490 SMART WD40_4 1242 1279 IPR001680 GO:0005515
Trre2g04505 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1456 1490 IPR001680 GO:0005515
Trre2g04505 1490 MobiDBLite consensus disorder prediction 309 333 - -
Trre2g04505 1490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1456 1490 - -
Trre2g04505 1490 MobiDBLite consensus disorder prediction 309 328 - -
Trre2g04505 1490 Gene3D - 1195 1299 IPR015943 GO:0005515
Trre2g04505 1490 MobiDBLite consensus disorder prediction 371 420 - -
Trre2g04505 1490 SUPERFAMILY WD40 repeat-like 1221 1489 IPR036322 GO:0005515
Trre2g04505 1490 SUPERFAMILY RING/U-box 514 587 - -
Trre2g04505 1490 MobiDBLite consensus disorder prediction 383 407 - -
Trre2g04505 1490 CDD RING-Ubox_PUB 516 568 IPR045210 -
Trre2g04505 1490 SUPERFAMILY ARM repeat 654 1188 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04505 Trre-Chr2 52491252 52498067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04505 508 912 U-box Gene Family AT1G23030 24.766 5.34e-19 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04505 - - gmx:100776142 2417.5