Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04497 ATGACTACATCAGAAGAAACTTCAAGTCTGAAACTATTGAGCCAACATCTTTTGGAGGATATATCAGACTCCTTTTTCACCAATCTCAGTTCTGTAAAACTTGAATACACATCATCATCATCACCATCATCAGAAATTGGTTTGGATTCATATTTTTCAGAACATAATAGTTTTCTTGAAAGCCTTGGTTTTGAAGCTGATACAAAATTCATTGACTTCACTTCTCATGATAAGGTACAAAACATGAAGGAAGAAAGACCCTTTGAGGAAACACAGAAGAAGAAGTCAAATTTAGCAGAACCAATAGTGTTAGAGAAGAAGGAACAAAGATGTTATGGAGGAAAGCAATACAGAGGAGTGAGGAGAAGGCCATGGGGTAAATTTGCTGCAGAGATTCGCGACCCTTCAAATAAAGGAAGCAGGGTTTGGTTAGGAACATTTAACAATGAGATTGATGCTGCTAAGGCTTATGATTGTGCAGCTTTCAGAATGAGGGGTCAGAAAGCTATATTGAATTTTCCTTTGGAAGCTGGTAAAGCTAATCCAATGCCTAATAACAGTATCTGTGGAAGGAAAAGGAGAATACATCAGAGAGATGCTGCTACAAGTTCAAGTTAA 618 0.3738 MTTSEETSSLKLLSQHLLEDISDSFFTNLSSVKLEYTSSSSPSSEIGLDSYFSEHNSFLESLGFEADTKFIDFTSHDKVQNMKEERPFEETQKKKSNLAEPIVLEKKEQRCYGGKQYRGVRRRPWGKFAAEIRDPSNKGSRVWLGTFNNEIDAAKAYDCAAFRMRGQKAILNFPLEAGKANPMPNNSICGRKRRIHQRDAATSSS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04497 205 Pfam AP2 domain 116 166 IPR001471 GO:0003700|GO:0006355
Trre2g04497 205 SUPERFAMILY DNA-binding domain 116 176 IPR016177 GO:0003677
Trre2g04497 205 PRINTS Ethylene responsive element binding protein signature 156 176 IPR001471 GO:0003700|GO:0006355
Trre2g04497 205 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Trre2g04497 205 MobiDBLite consensus disorder prediction 184 205 - -
Trre2g04497 205 SMART rav1_2 116 180 IPR001471 GO:0003700|GO:0006355
Trre2g04497 205 FunFam Ethylene-responsive transcription factor 2 115 176 - -
Trre2g04497 205 CDD AP2 115 174 IPR001471 GO:0003700|GO:0006355
Trre2g04497 205 Gene3D AP2/ERF domain 115 176 IPR036955 GO:0003700|GO:0006355
Trre2g04497 205 ProSiteProfiles AP2/ERF domain profile. 116 174 IPR001471 GO:0003700|GO:0006355
Trre2g04497 205 PANTHER DNA-BINDING DOMAIN 78 184 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04497 Trre-Chr2 52432880 52433497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04497 1 194 AP2-EREBP Transcription Factor Family AT5G07580 39.048 7.01e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g04497 AP2 3.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04497 - - gmx:100499732 228.024