Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04488 ATGCCAGGCTTTCCTGTCGCGGCTGGTGAACCATGTAATTTTATAAGCACAGATCAACAACCTAGCCCTCTAGATGCTTCTGTGCAATTATCTGCCGAAGAGAAAGTTGTTGCAGAACAGAGTCTTTCAGTTTATTGCAAGCCTGTAGAGTTTTACAACTTTCTTTATCACCGTATTCTGCAACGTACTCCATCTTTCATTCCGAGATGTTTAGAGTACAGGAGAGAGGCTAGGAGAGAGAAAAGGACACAAATGACAGTTATGCTGTCATGGAATGATGAAGAAACTCAAAATGTGTGTCCTTTGTATATCGGTCTGGCAAGGCGTGATCCTAATAATGAAGATGCTGATATATATACCTTTCGAGGTTCCTCTGGCATTGACGGGAACTATAAAATCAGAGCAGAGTTTGTGCTCTTGGAAGTTAATGAGTTAGCAGCGGACGGCTCACTTTTTCTCTTGTTTTTCACCACTGAGGGAAATTCAAATTCATCATCTAGAGTCAATGCAAGTCTGGGGCCTTATGATCCGACTTCTCATGAATCAATAGCTGAAAAGATCTGCTTATACGAGAAAATTTCTTTTCAATCAATTTATATGGCTTGGGATAGTTCTCCAAGCTTCCGTTGGGGACAACGAGCTGAGATTACGACTACTCTTGATCTGCTTCCATGTATTTTGAAGTATGATGTTCTAAATAAGGGCACAACCATCGCAATCCAAGATCTCCGGAATTCTGAGATTGTGAGTACATCAAAGAATGTTCAAATCAAAATCTTTGCTGAAGAGTTCAGGGGCATGGAGAAATCTGTCAACTATACAAATGTCAGGGTTAATGTACCATCATCACCGTCGTCGTCATCCGCATCTTGTCTGATTCGGTTGAAAGAAGGAAAAGTGAAATTTAATTACAGGTATTTCAATAACAAATTGCAGAGAACAGAAGTCACTGAAGATTTCTCTTGTCCATTCTGTTATTTAAGATGTGCAAGCTATAAGGGTTTAAGATGCCATCTGCTCGCATCACATGATCTTTTCAAGTATGAATTTTCGGCATCGGAACATTGTCTGGCTGTTAATGTGTCTTGGAATCATGATACCTGGAGAACTGAGATTATTGGAGATGATGTTGATCCAAGATTGCAAACTTTTTACCTCCGTTGCAAGCGATACAAACACACAAGTCCAGAAGTTGCATGTTTTGAAGAGTTCCAGGGTGCTGACTCACCGGCCTTAGCTAATAATGCCGACCCACCAGCCTTTGCTATGGATGTTGATCCACCGGTCTTTGCTATGGATGCAGACCCACCGGTCCTAACTATGGGTGCAGACCCGCCAGTTTTATTTAAGGGTACAGACCCACCGAACTTAGCTATTGATGCAGACCCACCGGTCTTAACTATGGGTGCAGACCCACCGGTCTTAGCTAAGGATACAGACCCACCGAACTTAGCTATTGATGCAGACCCACCGGTCTTAACTATGGATGCAGACCCACCGGTCTTAGCTAAGGATACAGACCCACCGAACTTAGCTATTGATGCAGACCCACCGGTCTTAACTATGGATGCAGACCCACCGGTCTTAGCTAAGGATACAGACCTACCGAACTTAGCTATTGATGCGGACCCACCAGTCTTAGCTATTGATGCGGACCCACCGGTCTTAGCTATTGATGCAGACCCACCAATCTTATCTACTGATGCAGACCCACGGTTCTTAGCTATTGATGCGGACCCACTGGTCTTAGTTATGGATGCGGACCAACCGGTCTTAGCTATTGATGCGGACCCACCACTCTTAGCTACGGATGCAGACCCAACAATCTTAGCTAATGATGCAGACCCACCGGTCTTAGCTATTGATGTGGACCCAACGTCCATAGCTACGGATGCAGACCAACTATTCTTAGAGTCTGAAAATCCTTCAGGAGATATTGAGTTTTTGAAGAAGGCTGATGGAAATTCTGCAACTATATCAGGAGTTGCAAATGAAAATGTTGTATCCAATCCTGATCAAGATTTTGTCCCACCAATATCTGAGCATGACCATGCGACTCCTGCAGTGCCACAGGTTGACAATGCAGCGAAGTTAGACAAACAAAGCATAGCCCAGTTGCAGAAGCGAAAGTTTTATCATTCTCACAAAGCCCAGGAAATGTCACTTGAAGAAGTTCTATCAGATTATGATAGTGAGAATGAAGTTGATCCTGAAGTTGAAGACATTGAAGAGCGAAGGAGGCTTAATCTTCATGATGTTAGCAAAGAAGAGAAGGAATTCATGTTCATGTGGAACTCATTTATACGGAAGCAACGTGTGCTGGTAGATTCTCACATTCGTTGGGCATGTAAGGCTTTCTCAATATTGCATGGCACTGAGCTTGTTAAATCCCGTGAATTATCTTGGCATTGGAGAATGTTCAGGCTCAAATTATACAATTTTGGTCTTATAGATGGAAAGGTCATGAACGATTGCAGTATTATTCTCGAACAATACGAGAAGAATAAATCAAATCCTGAGATCCCAATCGCTAATATAAACTCCATTCTTTTGACCCCTCGTAAAAATAAAAGAAAGAAATGA 2583 0.4262 MPGFPVAAGEPCNFISTDQQPSPLDASVQLSAEEKVVAEQSLSVYCKPVEFYNFLYHRILQRTPSFIPRCLEYRREARREKRTQMTVMLSWNDEETQNVCPLYIGLARRDPNNEDADIYTFRGSSGIDGNYKIRAEFVLLEVNELAADGSLFLLFFTTEGNSNSSSRVNASLGPYDPTSHESIAEKICLYEKISFQSIYMAWDSSPSFRWGQRAEITTTLDLLPCILKYDVLNKGTTIAIQDLRNSEIVSTSKNVQIKIFAEEFRGMEKSVNYTNVRVNVPSSPSSSSASCLIRLKEGKVKFNYRYFNNKLQRTEVTEDFSCPFCYLRCASYKGLRCHLLASHDLFKYEFSASEHCLAVNVSWNHDTWRTEIIGDDVDPRLQTFYLRCKRYKHTSPEVACFEEFQGADSPALANNADPPAFAMDVDPPVFAMDADPPVLTMGADPPVLFKGTDPPNLAIDADPPVLTMGADPPVLAKDTDPPNLAIDADPPVLTMDADPPVLAKDTDPPNLAIDADPPVLTMDADPPVLAKDTDLPNLAIDADPPVLAIDADPPVLAIDADPPILSTDADPRFLAIDADPLVLVMDADQPVLAIDADPPLLATDADPTILANDADPPVLAIDVDPTSIATDADQLFLESENPSGDIEFLKKADGNSATISGVANENVVSNPDQDFVPPISEHDHATPAVPQVDNAAKLDKQSIAQLQKRKFYHSHKAQEMSLEEVLSDYDSENEVDPEVEDIEERRRLNLHDVSKEEKEFMFMWNSFIRKQRVLVDSHIRWACKAFSILHGTELVKSRELSWHWRMFRLKLYNFGLIDGKVMNDCSIILEQYEKNKSNPEIPIANINSILLTPRKNKRKK 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04488 860 Coils Coil 858 860 - -
Trre2g04488 860 PANTHER POLYCOMB GROUP PROTEIN 29 838 - -
Trre2g04488 860 CDD VEFS-box_EMF2-like 706 832 - -
Trre2g04488 860 Pfam VEFS-Box of polycomb protein 698 827 IPR019135 -
Trre2g04488 860 CDD ZnB-Zn_EMF2-like 294 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04488 Trre-Chr2 52365182 52379222 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04488 642 833 C2H2 Transcription Factor Family AT5G51230 45.596 1.04e-38 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04488 - - psat:127098431 1181.01