Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04480 ATGAATTCGAATGAAGAGATGGTGCCTAACCATGATACTGAGAGAAGCCAAGAGTCTCACCTAGTCACGACAGAAGTGCAACACCAATCACAGAACACTACTACCACCATCGTCAACAACCACCATACATCACCATCTGTTGTTGGCCTTAGGCCGCGGGGCCGTCCACCTGGATCGAAAAACAAGCCCAAGGCGCCTGTCATGGTACCACGTGACGACCCCAATATACTTCATTGTGAAATACTTAAGGTTCCCCATGGAGTTGACTTGTCAAAGGCTATTAAAGATTACATTCGTCGCAAAAAGAGCTCCATATACATCATGAGTGCAAATGGATGTGTGGACCAAGTCACACTTCATACAAAAATAGGGGAAATCATAACTTTTCAGGAAAAGTTTGAAATTGTTTCGATGTCAGGATCAATTCTCATGCCGCCGAAACCAACAGATGCAGGAGTGAACATTTGTCTGTCAGGAATTAAAGGACAAGTGGTTGCGGGGGATGTGATTCCCCCTCTTGTGGCATCAGGCCTAGTGTTGTTGACTGTTTGTCCCCTTGCAAACACTGCATCTGAAAACATATATCTAAGGATATATAACCGGGAGGAACATGAACCTGTATGCCCCATTGCAGATGAGCACATGGCAAAAGATGGCGATGACTTGTTAGATGCTGAAGGATCACTTAATGGAATGGGGAACATGAAGAGTAGCAACATCAACGATCCCTCTTCCTCCACTCGGGGTCCTATGTTTTAA 759 0.4506 MNSNEEMVPNHDTERSQESHLVTTEVQHQSQNTTTTIVNNHHTSPSVVGLRPRGRPPGSKNKPKAPVMVPRDDPNILHCEILKVPHGVDLSKAIKDYIRRKKSSIYIMSANGCVDQVTLHTKIGEIITFQEKFEIVSMSGSILMPPKPTDAGVNICLSGIKGQVVAGDVIPPLVASGLVLLTVCPLANTASENIYLRIYNREEHEPVCPIADEHMAKDGDDLLDAEGSLNGMGNMKSSNINDPSSSTRGPMF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04480 252 MobiDBLite consensus disorder prediction 22 46 - -
Trre2g04480 252 MobiDBLite consensus disorder prediction 1 70 - -
Trre2g04480 252 CDD DUF296 81 180 IPR005175 -
Trre2g04480 252 SUPERFAMILY AF0104/ALDC/Ptd012-like 77 195 - -
Trre2g04480 252 PIRSF ESCAROLA 1 248 IPR014476 GO:0003680
Trre2g04480 252 Gene3D - 79 204 - -
Trre2g04480 252 MobiDBLite consensus disorder prediction 231 252 - -
Trre2g04480 252 ProSiteProfiles PPC domain profile profile. 74 211 IPR005175 -
Trre2g04480 252 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 184 IPR005175 -
Trre2g04480 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 207 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04480 Trre-Chr2 52301532 52302290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04480 49 196 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 41.875 1.85e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04480 - - psat:127088334 185.267