Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04470 ATGAGTAATGAGGATCCTGGAATTTCAGGCAATACTTATAGAGGTGTTGTGAGTGTTGGGTTTAGCGACATAACCTCTTCTGGTAAAGATGATGAAGATAATGTATGTCATCAGACCGGTGAAGAATTTTCTTCCGAGTTCTTACGCGACCGGGTTGCTTTAAGGAAGTTTCCTGTCATACCTGATGTAGAGCAGCGCCTGTCAAACATATTGAACTTTAATAATAACAATTATCAATTGGTCTTTGAGGATCAAAATCAAAATCATGTCCTTGGTCTTGGGAGAATGGATTCTGATAGCAATTTGGATTTGTCAGAGATTGCTTCGGCTAGAGGCTATGTTGCTGAAGCTGACAACAGGGCTTATCATAATAATTTGAGCAAATACCAGTGTGAACATGGTGGTAGCAGACAAGCATCGAGTACATTTTCCAGACAATCATCAAGTAGGTTTTCGGACGAATGCGATCAATTTGCCTCAGGATCAAATAGTGGTATCAGACAAACATCGGGTGCATTTTCCAGACAATTATCAAGTAGGTTTTCTGACGGATGCGATCAAGTTGCCTCAGGACCAAATACTCCGTCTATTTATGCCGGTGAGTCACCTCGTTCGTGCCATCCTTATGGAACAGTATTCTCAGAAGGTTCCTTCAAGAAAATAAAGTTTCTATGTAGTTTTGGAGGTCGAATACTGCCAAGACCAAATGACGGGAAACTCAGATATGTGGGTGGAGAGACGCGGATTATATCGATTAGGAGGAACATCACGCACGAAGAACTTACGGGGAAGACTTCTGGTATTTGCAATCAAACTCACATTATCAAATACCAACTTCCGGGAGAGGATCTTGATGCTCTTATATCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAATATGAAGAGCTTGAAAGAGCTGGAGGATCTCAACGACTTAGGATTTTTCTTATACCTTCAAATGAACCTGAGAGTCCAAGCTCTAATGAATCAAGAGTCAATCAGCAAAGTGATGTTGATTACCATTATGTTGTTGCTGTTAATGGTATACTAGATCGAAGTCCACGAAAGAATCCTGGTGGACTAAGTCTGGCAAGCCATACAAGCCAATTTGCAAATACTTCTGATTACAACAATCTACACTTCCCTAGGGAATCATCCACATATGCATTTGCTTCCGAGGTAAAGGATTGCAACCCAACCTCTTCAAATTTGGCAGACATAATGTCAAAACCAGGTCCATTTTTAGCATCACTTAAGGTAGGGGGCAAGTCATTTAATCAAACGCATCTATCTGCCATTTGTGTGCAGCCTAAAGATCAAACAAATTCTAATGTTCAGTTATTTACGGATCAATCATATAATGTTGTTAATGAAAACATAATACCCTATGGCATGGAAAAAATTCCACGTGACAACTCTTTGTATGTGGATAATACCGGTTATGCTGATCCCATTGCATATTATAACAATCTTACCCAAGGGTCTCCATGTGTGAACTATCATCCTAGTAATCAATATACGTTGGAGTCTGACCAAGACAGGAAGTCTAATGTTGAATTTAATTTTCACAGACGAACCAATAGTAAAGAATTTGTCTCTCCTGTAATTTGTAATCAAACTGATATGATATTTGAGAGACCTTTAGTTAATAATGAAGGTTCATACCATTTTAACAATATTGTCTCTCATCCTCATGAGTCAGCGAGTGTCTTTTCGGTGTCTGGCGATAGGGATGTATCTCAATACAAAATGTTGCATACTCTTTCCGACTCAACGCTTCTAAAGAAAAATGAAAATTTCAAAGGTCACACGCAATTTCCGTTTAATGTTGAGCGAGAAAAACTATCATCATTGGAAACTTCAAGTTCTTTTGAAGAATGTTCAATACAGCCAGGAGAGATAAATGATGGGAGAGAGCATATGCCTTTACATCAAAACCCACCCACTTTTGGAATGACTGATAGTTACAACAGATTGTCAGAAATTGGTAGAGAGAAATTACAACATGCAAATAAAAGTGTTGACTGGCTTGATGAAAAAATTGGATCTACGCCACAACATTTACAGTACATCTACTACCAACACGGTGCTTGCTCATCTTCACCAGACTTACAAAGTAGTGAATGCAATGCATCTGCTGCACCATGTATCCCTTCACAATCTACTAGAAGCATCACAGAGCAACCACATGGTATACCATTAGACACAATTGCTTCTGAGTTTTCTATGAGGAGCCAAAATTCATCAATGCATCGCCAATATATTGTGTCGGAGACAAAATATGATCATCCACCTCCTCCCGACTCTTTTGAGTTAAGACCTACTAACTCCCTAATCGTCACAGAGTCTGTATTACCAATCTCATATCCAGATATGGTTTATTCTTCACTAAGAGAGGTTGTTGTCCCTGGTGATGATCTTGCATACTACCAGAACCAAAAGGAAGAAAATATAGTCAATGACAAACAATCTCATGAATACATTGATGAATTTTGCATCATCAAGCCAGAATCAACAACAGTTGTCACAGAGCCAATTGATTATATTTCTTCAGGTATCCGGTCATGCTTACAAGTTGTCTCAAATATAGATAAAGAGGACAAAGTTGAACATACTTCTCCTACAAAGGCAGGGGTAGTGTTTGTTAATCATGAATCTGAAAGTAAGCTTGCAAAAGCTGATAGTGGAAACTTCAATAGGCCTATTGGTGATTCAGAAACTGCTGAAACAGATTCTGAATTGTATGGTTTACAGATTATTGAGAATGGCGATCTCGAAGAACTACATGAGTTAGGATCTGGAACCTTTGGAACCGTTTATCATGGCAAATGGAGGGGAACCGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCGCTGGTAGATTGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGAGAGGCAAAGATCCTGTCAACTCTTCACCATCCAAATGTGGTGGCATTTTACGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGGCAACTGTAACAGAATACATGTTGCATGGATCACTGAGGAATGTTCTCTTGAAGAAGGAGAGAGTGCTTGATCGTCGTAAAAGGGTCATGATTGCAATGGATGCAGCCTTTGGAATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATTTGAAATGTGATAATTTACTTGTCAATTTGGGCGATCCTGAACGGCCTGTATGTAAGGTTGGAGATTTTGGCCTATCAAGAATTAAACGCAACACACTTGTTTCTGGTGGTGTCAGAGGGACTCTTCCATGGATGGCACCAGAATTATTGGATGGCAACAGTTGTAGAGTATCTGAGAAGGTTGATATTTTCTCATTTGGTATAGCAATGTGGGAAATCTTGACTGGGGAAGAACCGTACGCTAATATGCATTGTGGTGCCATCATAGGAGGTATTGTCAGTAACACGCTCAGGCCATCCATTCCGAAACGATGCGATTCTGAGTGGAAAAAATTGATGGAAGAGTGTTGGAGCCCTGATCCAGAAGCCAGGCCATCTTTCACAGAAGTTAAAAATAGACTCCGCAACATGTCAGCGGCACTGCAAAAAAAGAGACCTAACGTTAGGAGTCGATGA 3627 0.3967 MSNEDPGISGNTYRGVVSVGFSDITSSGKDDEDNVCHQTGEEFSSEFLRDRVALRKFPVIPDVEQRLSNILNFNNNNYQLVFEDQNQNHVLGLGRMDSDSNLDLSEIASARGYVAEADNRAYHNNLSKYQCEHGGSRQASSTFSRQSSSRFSDECDQFASGSNSGIRQTSGAFSRQLSSRFSDGCDQVASGPNTPSIYAGESPRSCHPYGTVFSEGSFKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRRNITHEELTGKTSGICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERAGGSQRLRIFLIPSNEPESPSSNESRVNQQSDVDYHYVVAVNGILDRSPRKNPGGLSLASHTSQFANTSDYNNLHFPRESSTYAFASEVKDCNPTSSNLADIMSKPGPFLASLKVGGKSFNQTHLSAICVQPKDQTNSNVQLFTDQSYNVVNENIIPYGMEKIPRDNSLYVDNTGYADPIAYYNNLTQGSPCVNYHPSNQYTLESDQDRKSNVEFNFHRRTNSKEFVSPVICNQTDMIFERPLVNNEGSYHFNNIVSHPHESASVFSVSGDRDVSQYKMLHTLSDSTLLKKNENFKGHTQFPFNVEREKLSSLETSSSFEECSIQPGEINDGREHMPLHQNPPTFGMTDSYNRLSEIGREKLQHANKSVDWLDEKIGSTPQHLQYIYYQHGACSSSPDLQSSECNASAAPCIPSQSTRSITEQPHGIPLDTIASEFSMRSQNSSMHRQYIVSETKYDHPPPPDSFELRPTNSLIVTESVLPISYPDMVYSSLREVVVPGDDLAYYQNQKEENIVNDKQSHEYIDEFCIIKPESTTVVTEPIDYISSGIRSCLQVVSNIDKEDKVEHTSPTKAGVVFVNHESESKLAKADSGNFNRPIGDSETAETDSELYGLQIIENGDLEELHELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRLSEQERLTKDFWREAKILSTLHHPNVVAFYGVVPDGPGGTLATVTEYMLHGSLRNVLLKKERVLDRRKRVMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPSIPKRCDSEWKKLMEECWSPDPEARPSFTEVKNRLRNMSAALQKKRPNVRSR 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04470 1208 Gene3D Transferase(Phosphotransferase) domain 1 1016 1207 - -
Trre2g04470 1208 SMART serkin_6 928 1197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04470 1208 PRINTS Tyrosine kinase catalytic domain signature 1047 1065 IPR001245 GO:0004672|GO:0006468
Trre2g04470 1208 PRINTS Tyrosine kinase catalytic domain signature 1162 1184 IPR001245 GO:0004672|GO:0006468
Trre2g04470 1208 PRINTS Tyrosine kinase catalytic domain signature 1118 1140 IPR001245 GO:0004672|GO:0006468
Trre2g04470 1208 PRINTS Tyrosine kinase catalytic domain signature 1010 1023 IPR001245 GO:0004672|GO:0006468
Trre2g04470 1208 ProSitePatterns Protein kinases ATP-binding region signature. 934 955 IPR017441 GO:0005524
Trre2g04470 1208 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 240 322 - -
Trre2g04470 1208 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1016 1207 - -
Trre2g04470 1208 PANTHER SERINE-THREONINE PROTEIN KINASE 267 1192 - -
Trre2g04470 1208 CDD STKc_MAP3K-like 934 1191 - -
Trre2g04470 1208 Gene3D Phosphorylase Kinase; domain 1 921 1015 - -
Trre2g04470 1208 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 921 1015 - -
Trre2g04470 1208 SUPERFAMILY CAD & PB1 domains 236 329 - -
Trre2g04470 1208 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1053 1065 IPR008271 GO:0004672|GO:0006468
Trre2g04470 1208 Pfam Protein tyrosine and serine/threonine kinase 930 1191 IPR001245 GO:0004672|GO:0006468
Trre2g04470 1208 Gene3D - 239 322 - -
Trre2g04470 1208 CDD PB1_UP2 224 320 - -
Trre2g04470 1208 SUPERFAMILY Protein kinase-like (PK-like) 917 1191 IPR011009 -
Trre2g04470 1208 Pfam PB1 domain 236 320 IPR000270 GO:0005515
Trre2g04470 1208 SMART PB1_new 235 322 IPR000270 GO:0005515
Trre2g04470 1208 ProSiteProfiles Protein kinase domain profile. 928 1198 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04470 Trre-Chr2 52230341 52236713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04470 220 360 MAP Kinase Kinase Kinase AT1G16270 55.944 9.33e-38 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre2g04470 PK_Tyr_Ser-Thr 1.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04470 - - tpra:123914366 2227.21