Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04468 ATGAGTAATGAGGATCCTGGAATTTCAGGCAATACTTATAGAGGTGTTGTGAGTGTTGGGTTTAGCGACATAACCTCTTCTGGTAAAGATGATGAAGATAATGTATGTCATCAGACCGGTGAAGAATTTTCTTCCGAGTTCTTACGCGACCGGGTTGCTTTAAGGAAGTTTCCTGTCATACCTGATGTAGAGCAGCGCCTGTCAAACATATTGAACTTTAATAATAACAATTATCAATTGGTCTTTGAGGATCAAAATCAAAATCATGTCCTTGGTCTTGGGAGAATGGATTCTGATAGCAATTTGGATTTGTCAGAGATTGCTTCGGCTAGAGGCTATGTTGCTGAAGCTGACAACAGGGCTTATCATAATAATTTGAGCAAATACCAGTGTGAACATGGTGGTAGCAGACAAGCATCGAGTACATTTTCCAGACAATCATCAAGTAGGTTTTCTGACGGATGCGATCAAGTTGCCTCAGGACCAAATACTCCGTCTATTTATGCCGGTGAGTCACCTCGTTCGTGCCATCCTTATGGAACAGTATTCTCAGAAGGTTCCTTCAAGAAAATAAAGTTTCTATGTAGTTTTGGAGGTCGAATACTGCCAAGACCAAATGACGGGAAACTCAGATATGTGGGTGGAGAGACGCGGATTATATCGATTAGGAGGAACATCACGCACGAAGAACTTACGGGGAAGACTTCTGGTATTTGCAATCAAACTCACATTATCAAATACCAACTTCCGGGAGAGGATCTTGATGCTCTTATATCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAATATGAAGAGCTTGAAAGAGCTGGAGGATCTCAACGACTTAGGATTTTTCTTATACCTTCAAATGAACCTGAGAGTCCAAGCTCTAATGAATCAAGAGTCAATCAGCAAAGTGATGTTGATTACCATTATGTTGTTGCTGTTAATGGTATACTAGATCGAAGTCCACGAAAGAATCCTGGTGGACTAAGTCTGGCAAGCCATACAAGCCAATTTGCAAATACTTCTGATTACAACAATCTACACTTCCCTAGGGAATCATCCACATATGCATTTGCTTCCGAGGTAAAGGATTGCAACCCAACCTCTTCAAATTTGGCAGACATAATGTCAAAACCAGGTCCATTTTTAGCATCACTTAAGGTAGGGGGCAAGTCATTTAATCAAACGCATCTATCTGCCATTTGTGTGCAGCCTAAAGATCAAACAAATTCTAATGTTCAGTTATTTACGGATCAATCATATAATGTTGTTAATGAAAACATAATACCCTATGGCATGGAAAAAATTCCACGTGACAACTCTTTGTATGTGGATAATACCGGTTATGCTGATCCCATTGCATATTATAACAATCTTACCCAAGGGTCTCCATGTGTGAACTATCATCCTAGTAATCAATATACGTTGGAGTCTGACCAAGACAGGAAGTCTAATGTTGAATTTAATTTTCACAGACGAACCAATAGTAAAGAATTTGTCTCTCCTGTAATTTGTAATCAAACTGATATGATATTTGAGAGACCTTTAGTTAATAATGAAGGTTCATACCATTTTAACAATATTGTCTCTCATCCTCATGAGTCAGCGAGTGTCTTTTCGGTGTCTGGCGATAGGGATGTATCTCAATACAAAATGTTGCATACTCTTTCCGACTCAACGCTTCTAAAGAAAAATGAAAATTTCAAAGGTCACACGCAATTTCCGTTTAATGTTGAGCGAGAAAAACTATCATCATTGGAAACTTCAAGTTCTTTTGAAGAATGTTCAATACAGCCAGGAGAGATAAATGATGGGAGAGAGCATATGCCTTTACATCAAAACCCACCCACTTTTGGAATGACTGATAGTTACAACAGATTGTCAGAAATTGGTAGAGAGAAATTACAACATGCAAATAAAAGTGTTGACTGGCTTGATGAAAAAATTGGATCTACGCCACAACATTTACAGTACATCTACTACCAACACGGTGCTTGCTCATCTTCACCAGACTTACAAAGTAGTGAATGCAATGCATCTGCTGCACCATGTATCCCTTCACAATCTACTAGAAGCATCACAGAGCAACCACATGGTATACCATTAGACACAATTGCTTCTGAGTTTTCTATGAGGAGCCAAAATTCATCAATGCATCGCCAATATATTGTGTCGGAGACAAAATATGATCATCCACCTCCTCCCGACTCTTTTGAGTTAAGACCTACTAACTCCCTAATCGTCACAGAGTCTGTATTACCAATCTCATATCCAGATATGGTTTATTCTTCACTAAGAGAGGTTGTTGTCCCTGGTGATGATCTTGCATACTACCAGAACCAAAAGGAAGAAAATATAGTCAATGACAAACAATCTCATGAATACATTGATGAATTTTGCATCATCAAGCCAGAATCAACAACAGTTGTCACAGAGCCAATTGATTATATTTCTTCAGGTATCCGGTCATGCTTACAAGTTGTCTCAAATATAGATAAAGAGGACAAAGTTGAACATACTTCTCCTACAAAGGCAGGGGTAGTGTTTGTTAATCATGAATCTGAAAGTAAGCTTGCAAAAGCTGATAGTGGAAACTTCAATAGGCCTATTGGTGATTCAGAAACTGCTGAAACAGATTCTGAATTGTATGGTTTACAGATTATTGAGAATGGCGATCTCGAAGAACTACATGAGTTAGGATCTGGAACCTTTGGAACCGTTTATCATGGCAAATGGAGGGGAACCGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCGCTGGTAGATTGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGAGAGGCAAAGATCCTGTCAACTCTTCACCATCCAAATGTGGTGGCATTTTACGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGGCAACTGTAACAGAATACATGTTGCATGGATCACTGAGGAATGTTCTCTTGAAGAAGGAGAGAGTGCTTGATCGTCGTAAAAGGGTCATGATTGCAATGGATGCAGCCTTTGGAATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATTTGAAATGTGATAATTTACTTGTCAATTTGGGCGATCCTGAACGGCCTGTATGTAAGGTTGGAGATTTTGGCCTATCAAGAATTAAACGCAACACACTTGTTTCTGGTGGTGTCAGAGGGACTCTTCCATGGATGGCACCAGAATTATTGGATGGCAACAGTTGTAGAGTATCTGAGAAGGTTGATATTTTCTCATTTGGTATAGCAATGTGGGAAATCTTGACTGGGGAAGAACCGTACGCTAATATGCATTGTGGTGCCATCATAGGAGGTATTGTCAGTAACACGCTCAGGCCATCCATTCCGAAACGATGCGATTCTGAGTGGAAAAAATTGATGGAAGAGTGTTGGAGCCCTGATCCAGAAGCCAGGCCATCTTTCACAGAAGTTAAAAATAGACTCCGCAACATGTCAGCGGCACTGCAAAAAAAGAGACCTAACGTTAGGAGTCGATGA 3537 0.3964 MSNEDPGISGNTYRGVVSVGFSDITSSGKDDEDNVCHQTGEEFSSEFLRDRVALRKFPVIPDVEQRLSNILNFNNNNYQLVFEDQNQNHVLGLGRMDSDSNLDLSEIASARGYVAEADNRAYHNNLSKYQCEHGGSRQASSTFSRQSSSRFSDGCDQVASGPNTPSIYAGESPRSCHPYGTVFSEGSFKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRRNITHEELTGKTSGICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERAGGSQRLRIFLIPSNEPESPSSNESRVNQQSDVDYHYVVAVNGILDRSPRKNPGGLSLASHTSQFANTSDYNNLHFPRESSTYAFASEVKDCNPTSSNLADIMSKPGPFLASLKVGGKSFNQTHLSAICVQPKDQTNSNVQLFTDQSYNVVNENIIPYGMEKIPRDNSLYVDNTGYADPIAYYNNLTQGSPCVNYHPSNQYTLESDQDRKSNVEFNFHRRTNSKEFVSPVICNQTDMIFERPLVNNEGSYHFNNIVSHPHESASVFSVSGDRDVSQYKMLHTLSDSTLLKKNENFKGHTQFPFNVEREKLSSLETSSSFEECSIQPGEINDGREHMPLHQNPPTFGMTDSYNRLSEIGREKLQHANKSVDWLDEKIGSTPQHLQYIYYQHGACSSSPDLQSSECNASAAPCIPSQSTRSITEQPHGIPLDTIASEFSMRSQNSSMHRQYIVSETKYDHPPPPDSFELRPTNSLIVTESVLPISYPDMVYSSLREVVVPGDDLAYYQNQKEENIVNDKQSHEYIDEFCIIKPESTTVVTEPIDYISSGIRSCLQVVSNIDKEDKVEHTSPTKAGVVFVNHESESKLAKADSGNFNRPIGDSETAETDSELYGLQIIENGDLEELHELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRLSEQERLTKDFWREAKILSTLHHPNVVAFYGVVPDGPGGTLATVTEYMLHGSLRNVLLKKERVLDRRKRVMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPSIPKRCDSEWKKLMEECWSPDPEARPSFTEVKNRLRNMSAALQKKRPNVRSR 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04468 1178 SMART serkin_6 898 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04468 1178 CDD PB1_UP2 194 290 - -
Trre2g04468 1178 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1023 1035 IPR008271 GO:0004672|GO:0006468
Trre2g04468 1178 PRINTS Tyrosine kinase catalytic domain signature 1017 1035 IPR001245 GO:0004672|GO:0006468
Trre2g04468 1178 PRINTS Tyrosine kinase catalytic domain signature 1132 1154 IPR001245 GO:0004672|GO:0006468
Trre2g04468 1178 PRINTS Tyrosine kinase catalytic domain signature 1088 1110 IPR001245 GO:0004672|GO:0006468
Trre2g04468 1178 PRINTS Tyrosine kinase catalytic domain signature 980 993 IPR001245 GO:0004672|GO:0006468
Trre2g04468 1178 MobiDBLite consensus disorder prediction 137 170 - -
Trre2g04468 1178 ProSiteProfiles Protein kinase domain profile. 898 1168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04468 1178 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 210 292 - -
Trre2g04468 1178 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 891 985 - -
Trre2g04468 1178 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 986 1177 - -
Trre2g04468 1178 Pfam Protein tyrosine and serine/threonine kinase 900 1161 IPR001245 GO:0004672|GO:0006468
Trre2g04468 1178 SUPERFAMILY Protein kinase-like (PK-like) 887 1161 IPR011009 -
Trre2g04468 1178 Gene3D Transferase(Phosphotransferase) domain 1 986 1177 - -
Trre2g04468 1178 SUPERFAMILY CAD & PB1 domains 206 299 - -
Trre2g04468 1178 PANTHER SERINE-THREONINE PROTEIN KINASE 240 1162 - -
Trre2g04468 1178 MobiDBLite consensus disorder prediction 137 171 - -
Trre2g04468 1178 Gene3D - 209 292 - -
Trre2g04468 1178 ProSitePatterns Protein kinases ATP-binding region signature. 904 925 IPR017441 GO:0005524
Trre2g04468 1178 Pfam PB1 domain 206 290 IPR000270 GO:0005515
Trre2g04468 1178 SMART PB1_new 205 292 IPR000270 GO:0005515
Trre2g04468 1178 Gene3D Phosphorylase Kinase; domain 1 891 985 - -
Trre2g04468 1178 CDD STKc_MAP3K-like 904 1161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04468 Trre-Chr2 52230341 52236713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04468 38 330 MAP Kinase Kinase Kinase AT1G16270 39.189 1.26e-39 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre2g04468 PK_Tyr_Ser-Thr 1.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04468 - - tpra:123914366 2155.18