LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g04468	ATGAGTAATGAGGATCCTGGAATTTCAGGCAATACTTATAGAGGTGTTGTGAGTGTTGGGTTTAGCGACATAACCTCTTCTGGTAAAGATGATGAAGATAATGTATGTCATCAGACCGGTGAAGAATTTTCTTCCGAGTTCTTACGCGACCGGGTTGCTTTAAGGAAGTTTCCTGTCATACCTGATGTAGAGCAGCGCCTGTCAAACATATTGAACTTTAATAATAACAATTATCAATTGGTCTTTGAGGATCAAAATCAAAATCATGTCCTTGGTCTTGGGAGAATGGATTCTGATAGCAATTTGGATTTGTCAGAGATTGCTTCGGCTAGAGGCTATGTTGCTGAAGCTGACAACAGGGCTTATCATAATAATTTGAGCAAATACCAGTGTGAACATGGTGGTAGCAGACAAGCATCGAGTACATTTTCCAGACAATCATCAAGTAGGTTTTCTGACGGATGCGATCAAGTTGCCTCAGGACCAAATACTCCGTCTATTTATGCCGGTGAGTCACCTCGTTCGTGCCATCCTTATGGAACAGTATTCTCAGAAGGTTCCTTCAAGAAAATAAAGTTTCTATGTAGTTTTGGAGGTCGAATACTGCCAAGACCAAATGACGGGAAACTCAGATATGTGGGTGGAGAGACGCGGATTATATCGATTAGGAGGAACATCACGCACGAAGAACTTACGGGGAAGACTTCTGGTATTTGCAATCAAACTCACATTATCAAATACCAACTTCCGGGAGAGGATCTTGATGCTCTTATATCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAATATGAAGAGCTTGAAAGAGCTGGAGGATCTCAACGACTTAGGATTTTTCTTATACCTTCAAATGAACCTGAGAGTCCAAGCTCTAATGAATCAAGAGTCAATCAGCAAAGTGATGTTGATTACCATTATGTTGTTGCTGTTAATGGTATACTAGATCGAAGTCCACGAAAGAATCCTGGTGGACTAAGTCTGGCAAGCCATACAAGCCAATTTGCAAATACTTCTGATTACAACAATCTACACTTCCCTAGGGAATCATCCACATATGCATTTGCTTCCGAGGTAAAGGATTGCAACCCAACCTCTTCAAATTTGGCAGACATAATGTCAAAACCAGGTCCATTTTTAGCATCACTTAAGGTAGGGGGCAAGTCATTTAATCAAACGCATCTATCTGCCATTTGTGTGCAGCCTAAAGATCAAACAAATTCTAATGTTCAGTTATTTACGGATCAATCATATAATGTTGTTAATGAAAACATAATACCCTATGGCATGGAAAAAATTCCACGTGACAACTCTTTGTATGTGGATAATACCGGTTATGCTGATCCCATTGCATATTATAACAATCTTACCCAAGGGTCTCCATGTGTGAACTATCATCCTAGTAATCAATATACGTTGGAGTCTGACCAAGACAGGAAGTCTAATGTTGAATTTAATTTTCACAGACGAACCAATAGTAAAGAATTTGTCTCTCCTGTAATTTGTAATCAAACTGATATGATATTTGAGAGACCTTTAGTTAATAATGAAGGTTCATACCATTTTAACAATATTGTCTCTCATCCTCATGAGTCAGCGAGTGTCTTTTCGGTGTCTGGCGATAGGGATGTATCTCAATACAAAATGTTGCATACTCTTTCCGACTCAACGCTTCTAAAGAAAAATGAAAATTTCAAAGGTCACACGCAATTTCCGTTTAATGTTGAGCGAGAAAAACTATCATCATTGGAAACTTCAAGTTCTTTTGAAGAATGTTCAATACAGCCAGGAGAGATAAATGATGGGAGAGAGCATATGCCTTTACATCAAAACCCACCCACTTTTGGAATGACTGATAGTTACAACAGATTGTCAGAAATTGGTAGAGAGAAATTACAACATGCAAATAAAAGTGTTGACTGGCTTGATGAAAAAATTGGATCTACGCCACAACATTTACAGTACATCTACTACCAACACGGTGCTTGCTCATCTTCACCAGACTTACAAAGTAGTGAATGCAATGCATCTGCTGCACCATGTATCCCTTCACAATCTACTAGAAGCATCACAGAGCAACCACATGGTATACCATTAGACACAATTGCTTCTGAGTTTTCTATGAGGAGCCAAAATTCATCAATGCATCGCCAATATATTGTGTCGGAGACAAAATATGATCATCCACCTCCTCCCGACTCTTTTGAGTTAAGACCTACTAACTCCCTAATCGTCACAGAGTCTGTATTACCAATCTCATATCCAGATATGGTTTATTCTTCACTAAGAGAGGTTGTTGTCCCTGGTGATGATCTTGCATACTACCAGAACCAAAAGGAAGAAAATATAGTCAATGACAAACAATCTCATGAATACATTGATGAATTTTGCATCATCAAGCCAGAATCAACAACAGTTGTCACAGAGCCAATTGATTATATTTCTTCAGGTATCCGGTCATGCTTACAAGTTGTCTCAAATATAGATAAAGAGGACAAAGTTGAACATACTTCTCCTACAAAGGCAGGGGTAGTGTTTGTTAATCATGAATCTGAAAGTAAGCTTGCAAAAGCTGATAGTGGAAACTTCAATAGGCCTATTGGTGATTCAGAAACTGCTGAAACAGATTCTGAATTGTATGGTTTACAGATTATTGAGAATGGCGATCTCGAAGAACTACATGAGTTAGGATCTGGAACCTTTGGAACCGTTTATCATGGCAAATGGAGGGGAACCGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCGCTGGTAGATTGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGAGAGGCAAAGATCCTGTCAACTCTTCACCATCCAAATGTGGTGGCATTTTACGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGGCAACTGTAACAGAATACATGTTGCATGGATCACTGAGGAATGTTCTCTTGAAGAAGGAGAGAGTGCTTGATCGTCGTAAAAGGGTCATGATTGCAATGGATGCAGCCTTTGGAATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATTTGAAATGTGATAATTTACTTGTCAATTTGGGCGATCCTGAACGGCCTGTATGTAAGGTTGGAGATTTTGGCCTATCAAGAATTAAACGCAACACACTTGTTTCTGGTGGTGTCAGAGGGACTCTTCCATGGATGGCACCAGAATTATTGGATGGCAACAGTTGTAGAGTATCTGAGAAGGTTGATATTTTCTCATTTGGTATAGCAATGTGGGAAATCTTGACTGGGGAAGAACCGTACGCTAATATGCATTGTGGTGCCATCATAGGAGGTATTGTCAGTAACACGCTCAGGCCATCCATTCCGAAACGATGCGATTCTGAGTGGAAAAAATTGATGGAAGAGTGTTGGAGCCCTGATCCAGAAGCCAGGCCATCTTTCACAGAAGTTAAAAATAGACTCCGCAACATGTCAGCGGCACTGCAAAAAAAGAGACCTAACGTTAGGAGTCGATGA	3537	0.3964	MSNEDPGISGNTYRGVVSVGFSDITSSGKDDEDNVCHQTGEEFSSEFLRDRVALRKFPVIPDVEQRLSNILNFNNNNYQLVFEDQNQNHVLGLGRMDSDSNLDLSEIASARGYVAEADNRAYHNNLSKYQCEHGGSRQASSTFSRQSSSRFSDGCDQVASGPNTPSIYAGESPRSCHPYGTVFSEGSFKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRRNITHEELTGKTSGICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERAGGSQRLRIFLIPSNEPESPSSNESRVNQQSDVDYHYVVAVNGILDRSPRKNPGGLSLASHTSQFANTSDYNNLHFPRESSTYAFASEVKDCNPTSSNLADIMSKPGPFLASLKVGGKSFNQTHLSAICVQPKDQTNSNVQLFTDQSYNVVNENIIPYGMEKIPRDNSLYVDNTGYADPIAYYNNLTQGSPCVNYHPSNQYTLESDQDRKSNVEFNFHRRTNSKEFVSPVICNQTDMIFERPLVNNEGSYHFNNIVSHPHESASVFSVSGDRDVSQYKMLHTLSDSTLLKKNENFKGHTQFPFNVEREKLSSLETSSSFEECSIQPGEINDGREHMPLHQNPPTFGMTDSYNRLSEIGREKLQHANKSVDWLDEKIGSTPQHLQYIYYQHGACSSSPDLQSSECNASAAPCIPSQSTRSITEQPHGIPLDTIASEFSMRSQNSSMHRQYIVSETKYDHPPPPDSFELRPTNSLIVTESVLPISYPDMVYSSLREVVVPGDDLAYYQNQKEENIVNDKQSHEYIDEFCIIKPESTTVVTEPIDYISSGIRSCLQVVSNIDKEDKVEHTSPTKAGVVFVNHESESKLAKADSGNFNRPIGDSETAETDSELYGLQIIENGDLEELHELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRLSEQERLTKDFWREAKILSTLHHPNVVAFYGVVPDGPGGTLATVTEYMLHGSLRNVLLKKERVLDRRKRVMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPSIPKRCDSEWKKLMEECWSPDPEARPSFTEVKNRLRNMSAALQKKRPNVRSR	1178

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g04468	1178	SMART	serkin_6	898	1167	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g04468	1178	CDD	PB1_UP2	194	290	-	-
	Trre2g04468	1178	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	1023	1035	IPR008271	GO:0004672\|GO:0006468
	Trre2g04468	1178	PRINTS	Tyrosine kinase catalytic domain signature	1017	1035	IPR001245	GO:0004672\|GO:0006468
	Trre2g04468	1178	PRINTS	Tyrosine kinase catalytic domain signature	1132	1154	IPR001245	GO:0004672\|GO:0006468
	Trre2g04468	1178	PRINTS	Tyrosine kinase catalytic domain signature	1088	1110	IPR001245	GO:0004672\|GO:0006468
	Trre2g04468	1178	PRINTS	Tyrosine kinase catalytic domain signature	980	993	IPR001245	GO:0004672\|GO:0006468
	Trre2g04468	1178	MobiDBLite	consensus disorder prediction	137	170	-	-
	Trre2g04468	1178	ProSiteProfiles	Protein kinase domain profile.	898	1168	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g04468	1178	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	210	292	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g04468	Trre-Chr2	52230341	52236713	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g04468	38	330	MAP Kinase Kinase Kinase	AT1G16270	39.189	1.26e-39	158

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-6	Trre2g04468		PK_Tyr_Ser-Thr	1.5e-62	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g04468	-		-	tpra:123914366	2155.18

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