Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04466 ATGTGTGTTGGTGACACAAAAAGTGATGTGATGAAGGCTATTCATGACGGAGCTTGTGATTATTGGATCAAGCCTTTGAAAGAGAACCTTATTCAGAACATGTGGCAACATGTTGCAAGGAAAATGTGGATTGAAAATAAATACCTACAATTTACTGAAAAATTGGAGGCCGAAGGGGAGAGATATGATTCAAAGTTGCCGTTAATTGATCAAAAAATAGAAGTGATCAACTCTAATGTGAAACAAGGGAGTGTTGAAAAGAACAATAACAAACTTGAATCATCAACGAAAAAGACACGTTTTAAATGGTCACCAGAGTTGGATAAAAAGTTTGTTAGTGTCGTGATGGAACTCAATGCCGATAAGGCGGTACCCAAAAAAATTCTTGCAAAGATGAATGTGCCTGGATTGACTAGAGAACATGTAGCTAGTAAACTTCAGAAATATAGGGATCGTTTGAAGAGAGGAGATACAAAGAAACAAAGAAAATGGAACAGAATTGTAGAAGCTACTACAGAATCCAAGAGTTCAAATGAATCTTTAGAATTTGATTTTCAAGCTTATGATGCTTCTACTCCTCATGTTGTTCCCAACAATTTCATTCCTCCTGAATCTAAGAATATAATTAATGAAGCTCCATTTAATTTTTATCAAAATGATTATGAGGAAGAAATTAGTTCAGCTTTTAACAACCAACATTGCAATGGATTTGGGACTAATTCTATGTTCTTACCTAATGGCATCATCCCTCACCAAAATCCAATGACTCAACCTCTTCCTATGTTCTTTGAAAATTGGATATCTTCGTGA 810 0.3506 MCVGDTKSDVMKAIHDGACDYWIKPLKENLIQNMWQHVARKMWIENKYLQFTEKLEAEGERYDSKLPLIDQKIEVINSNVKQGSVEKNNNKLESSTKKTRFKWSPELDKKFVSVVMELNADKAVPKKILAKMNVPGLTREHVASKLQKYRDRLKRGDTKKQRKWNRIVEATTESKSSNESLEFDFQAYDASTPHVVPNNFIPPESKNIINEAPFNFYQNDYEEEISSAFNNQHCNGFGTNSMFLPNGIIPHQNPMTQPLPMFFENWISS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04466 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 154 IPR017930 -
Trre2g04466 269 Gene3D - 94 155 - -
Trre2g04466 269 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 152 IPR006447 GO:0003677
Trre2g04466 269 SUPERFAMILY Homeodomain-like 96 155 IPR009057 -
Trre2g04466 269 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 83 256 IPR044841 GO:0003700|GO:0006355
Trre2g04466 269 Pfam Myb-like DNA-binding domain 102 150 IPR001005 -
Trre2g04466 269 FunFam Two-component response regulator 94 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04466 Trre-Chr2 52227602 52228661 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04466 1 165 Response Regulator Gene Family AT3G16857 37.895 7.32e-29 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre2g04466 Myb_DNA-binding 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04466 - - tpra:123914928 318.931