Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04459 ATGGCACTTTACAAACAAGAGTTATTTCCTAAACAATTTTCAACCAACATTAGGGTTCTTGTGATTGATCATGATATCAATCTTCTCAATGCTATTGAGAAAGTACTATGCTATCAATTCTGTTACTCAGTCGAAACATGCTCCAAGGTTTCGGATGCTTTGAATCTTTTGAGGGAAAAAAAGGACAGTTTTGATATGGTACTAATTGAAGCCAAAATGCCTGATATGGATTCCTATGATTTTTTGCAACATGTTACACAACAAATCAATATCCCAGTTATTATGATGAGTGCTGATGACACAAAAAGTGATGTGATGAAGGCTATTGATGGCGGAGCTTGTGATTATTGGATCAAACCTTTGAGTGAGAACCTAATTCAGAACATGTGGCAACATGTTGCAAGGAAAATGTGGATTGAAAATAAATACCTACAATTTAGTGAAAAATTGGAGGTTGAAGTCGGCATGAAAAAAGGCGAGAGATACGATTCAAAGTTGCCGTTAATTGATCCAAAAATAGAAGTGATCAATTCTAATGCGAAACAAGAGAGTGTTGAAAAGAACAATGACAATCTTGAATCATCAACAAAAAAGACACGTTTTAAATGGTCATCAGAGTTGGATAAAAAATTTATTAGTGTCGTGATGGAACTCAATGCCGATAAGGCAGTACCCAAAAAAATTCTTGCAAGGATGAATGTGCCTGGATTGACAAGAGAGCATGTAGCTAGCCATCTTCAGAAATATAGGAATCGTTTGAAGAGAGGAGAGACAAAGAAACAAAAAAAATGGAACAGAACTGCAGAAGCTACTACAGAATCCAAGAGTTCAAATGAATCATTAGAATTTGATTTTCAAGCTTATGATGCTTCTACTCCTCATGTTGTTCCCAACAATTTCATTCCTCCTGATTCTAAGAATACAATTAATGAAGCTCCAGTTAATTTTTATCAAACTGATTATGAGGAAGAAATTAGTTCAGCTTTTATCAACAAGTATAATTGCAATGGATTTGAGACTAATTCTATTATTAATCCATTATTTATAAATACTCTTGATGCTCATTTTCCAAAAGCACAAGTTGGAAATATTTTCTTACCCAATGGCATCATCCCTTACCAAAATCCAATGACTCAACCTCTTCCGATGTTCTTTGAAAATTGGATATCTTCATGA 1176 0.3427 MALYKQELFPKQFSTNIRVLVIDHDINLLNAIEKVLCYQFCYSVETCSKVSDALNLLREKKDSFDMVLIEAKMPDMDSYDFLQHVTQQINIPVIMMSADDTKSDVMKAIDGGACDYWIKPLSENLIQNMWQHVARKMWIENKYLQFSEKLEVEVGMKKGERYDSKLPLIDPKIEVINSNAKQESVEKNNDNLESSTKKTRFKWSSELDKKFISVVMELNADKAVPKKILARMNVPGLTREHVASHLQKYRNRLKRGETKKQKKWNRTAEATTESKSSNESLEFDFQAYDASTPHVVPNNFIPPDSKNTINEAPVNFYQTDYEEEISSAFINKYNCNGFETNSIINPLFINTLDAHFPKAQVGNIFLPNGIIPYQNPMTQPLPMFFENWISS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04459 391 FunFam Two-component response regulator 194 257 - -
Trre2g04459 391 SMART REC_2 17 130 IPR001789 GO:0000160
Trre2g04459 391 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 252 IPR006447 GO:0003677
Trre2g04459 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Trre2g04459 391 MobiDBLite consensus disorder prediction 255 278 - -
Trre2g04459 391 Pfam Myb-like DNA-binding domain 202 250 IPR001005 -
Trre2g04459 391 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 273 IPR045279 GO:0009736
Trre2g04459 391 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Trre2g04459 391 Gene3D - 194 255 - -
Trre2g04459 391 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Trre2g04459 391 ProSiteProfiles Response regulatory domain profile. 18 134 IPR001789 GO:0000160
Trre2g04459 391 SUPERFAMILY CheY-like 16 152 IPR011006 -
Trre2g04459 391 Gene3D - 10 142 - -
Trre2g04459 391 CDD REC_typeB_ARR-like 19 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04459 Trre-Chr2 52205450 52207135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04459 53 287 Response Regulator Gene Family AT3G16857 39.615 3.87e-47 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre2g04459 Response_reg 2.2e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04459 - K14491 tpra:123915068 521.161